Locus 7868

Sequence ID X_DroMel_CAF1
Location 19,600,508 – 19,600,603
Length 95
Max. P 0.975165
window12909

overview

Window 9

Location 19,600,508 – 19,600,603
Length 95
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 79.18
Mean single sequence MFE -15.40
Consensus MFE -9.07
Energy contribution -9.19
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -2.84
Structure conservation index 0.59
SVM decision value 1.74
SVM RNA-class probability 0.975165
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19600508 95 - 22224390
CAUACAUUUAUGUGUACAUCCAUGUAAAAGACG-GGUCGCCACCCCCAACGCCUCACCACCCCCCCCCCCCCCUCACAUUGAAGGAAAACCCGAAA
..(((((..(((....)))..))))).....((-(((.((..........))..................((.((.....)).))...)))))... ( -13.50)
>DroSec_CAF1 6891 76 - 1
CAUACAUCUAUGUGUACAUCCAUGUAAACGAAGGGGUCCCCUCC-CCUACGCCUCACCACCC--------CCCUCACAUUGAA-----------AA
......((.(((((((((....))))..((.(((((......))-))).))...........--------....))))).)).-----------.. ( -16.60)
>DroSim_CAF1 6822 77 - 1
CAUACAUCUAUGUGUACAUCCAUGUAAACGGAGGGGUCCCCUCCCCCUACGCCUCACCACCC--------CCCUCACAUUGAA-----------AA
......((.(((((((((....))))...((((((...))))))..................--------....))))).)).-----------.. ( -16.10)
>consensus
CAUACAUCUAUGUGUACAUCCAUGUAAACGAAGGGGUCCCCUCCCCCUACGCCUCACCACCC________CCCUCACAUUGAA___________AA
......((.(((((((((....))))......(((((.............)))))...................))))).)).............. ( -9.07 =  -9.19 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:33 2006