| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,596,852 – 19,596,954 |
| Length | 102 |
| Max. P | 0.603661 |
| Location | 19,596,852 – 19,596,954 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.50 |
| Mean single sequence MFE | -23.68 |
| Consensus MFE | -13.88 |
| Energy contribution | -14.94 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19596852 102 - 22224390 AGUGAAAGUAGUUCGAACGCACUCGAAGGAACUUCGCUUUAAGACGAUUCUGAAAAGUGUGUUUUAAAGUAUUUGCAG--UUGACUUUUACUCAUUCCCCCUUU ((((((((....((((..(((...((((...))))(((((((((((...((....))..)))))))))))...)))..--))))))))))))............ ( -25.60) >DroSec_CAF1 3222 89 - 1 AGUGAGAGUAGUUCGAACGCACGCCGAAGAACUUCGCUUUAAGACGAUUUUGAAAAGUGUGUUUUAAAGUAUUUGCAGAGUUGGCUUUU--------------- .(((...((.......)).)))((((((....)))(((((((((((...((....))..)))))))))))............)))....--------------- ( -19.30) >DroSim_CAF1 3184 88 - 1 AGUGAGAGUAGUUCGAACGCACGCGGAAGAACAUCGCUUUAAGACGAUUCUGAAAAGUGUGUUUUAAAGUAUUUGCAGUAUU----UUUACC------------ .(((((((((((((...((....))...))))...(((((((((((...((....))..)))))))))))........))))----))))).------------ ( -26.20) >DroEre_CAF1 3454 94 - 1 AGUGAUAGUAGUUCGAGCACACUC---AGAACUACGCUCUAAGGCGAUAUUGAAAACUGUGUUUCUAAGUCUUUGCCG--UUGGCUUUUAAUCAA-----AUUU ..((((.((((((((((....)))---.)))))))(((....(((((..(((.((((...)))).)))....))))).--..))).....)))).-----.... ( -23.60) >consensus AGUGAGAGUAGUUCGAACGCACGCGGAAGAACUUCGCUUUAAGACGAUUCUGAAAAGUGUGUUUUAAAGUAUUUGCAG__UUGGCUUUUACU____________ .(..((.(.(((((..............))))).)(((((((((((...((....))..))))))))))).))..)............................ (-13.88 = -14.94 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:30 2006