Locus 7865

Sequence ID X_DroMel_CAF1
Location 19,595,901 – 19,596,021
Length 120
Max. P 0.821624
window12904

overview

Window 4

Location 19,595,901 – 19,596,021
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.50
Mean single sequence MFE -49.83
Consensus MFE -25.92
Energy contribution -26.70
Covariance contribution 0.78
Combinations/Pair 1.39
Mean z-score -1.98
Structure conservation index 0.52
SVM decision value 0.68
SVM RNA-class probability 0.821624
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19595901 120 - 22224390
GCGCUCCGAGGAAUCGCUGGUGUACGUGCAGCGCAGCGUUGCGCUGCUAGGCACCAAGGUGCUGCCGGCGCACUUUGCCCCCACGCCAGGCAACCUGGAGCUGGCCCGCUUCUAUGUGGA
..(((((.(((...(((((((......(((((((......)))))))..(((((....))))))))))))....(((((.........)))))))))))))....((((......)))). ( -56.50)
>DroVir_CAF1 2574 120 - 1
CAAGACGGAGGAGUCGCUGGUGCAUCUGCUGCGCAGCAUCGCGCUGCUGGGCACAAAAGUGCCGCCGCAUUGCUAUGCGCCGGCGCCUGGAAAUCUGGAGCUGGCCAAAUUCUUUGUGGA
....(((((((((((((((((((((..((((((((((.....)))))..(((((....)))))...)))..)).))))))))))(((..(....)..).)).)))....))))))))... ( -53.60)
>DroPse_CAF1 2597 120 - 1
AAAGUCCGAGGAGUCGCUAGUGUAUCUGCACCGCAGCAUCGCGCUGCUGGGAACGAAAGUGCAUUCGCACUAUUAUGCACCGACUCCCGGAAAUCUGGAGCUGGCUAGGUUUUUUAUGGA
....((((.(((((((...((((((.....(((((((.....))))).)).......(((((....)))))...)))))))))))))))))(((((((......)))))))......... ( -45.40)
>DroMoj_CAF1 2580 120 - 1
GAAGACCGAGGAGUCGCUGGUGCAUCUGCAGCGCAGCAUCGCCUUGCUGGGCACCAAAGUGCAGCCGCAUUGCUUUGCACCAACUCCUGGCCAACUGGAGCUGGCCAAAUUCUUCAUCGA
(((((...((((((...(((((((...((.((.(((((......))))).)).....(((((....)))))))..)))))))))))))(((((.(....).)))))....)))))..... ( -52.80)
>DroAna_CAF1 2599 120 - 1
GCGCACCGAGGAGACCCUGGUGUAUGUGCAGCGUAGUGUGGCCCUGCUGGGCACCAAGGUGCAGCCGCAUCACUUUGCUCCCCUGCCGGGUAAUCUGGAACUGGCCCGUUUCUAUGUGGA
.....(((.(((((((((((((...(.((((.((.(((((((((....))((((....)))).))))))).)).)))).)...)))))))......((.......))))))))...))). ( -43.80)
>DroPer_CAF1 2594 120 - 1
AAAGUCCGAGGAGUCGCUAGUGUAUCUCCACCGCAGCAUCGCGCUGCUGGGAACGAAAGUGCAUUCGCACUAUUAUGCACCGACUCCCGGAAAUCUGGAGCUGGCUAGGUUUUUUAUGGA
....((((.(((((((...((((((.(((.(.(((((.....))))).)))).....(((((....)))))...)))))))))))))))))(((((((......)))))))......... ( -46.90)
>consensus
GAAGACCGAGGAGUCGCUGGUGUAUCUGCAGCGCAGCAUCGCGCUGCUGGGCACCAAAGUGCAGCCGCAUUACUAUGCACCGACGCCCGGAAAUCUGGAGCUGGCCAGAUUCUUUAUGGA
.......((((((((((((((......(((((((......)))))))...((((....))))..(((((......))).(((.....)))......)).))))))..))))))))..... (-25.92 = -26.70 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:29 2006