Locus 7864

Sequence ID X_DroMel_CAF1
Location 19,589,538 – 19,589,631
Length 93
Max. P 0.993928
window12902 window12903

overview

Window 2

Location 19,589,538 – 19,589,631
Length 93
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 73.57
Mean single sequence MFE -23.57
Consensus MFE -14.31
Energy contribution -13.43
Covariance contribution -0.88
Combinations/Pair 1.24
Mean z-score -2.22
Structure conservation index 0.61
SVM decision value 2.44
SVM RNA-class probability 0.993928
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19589538 93 + 22224390
UACUUUGCUCACAGCGA-CUUCGCUUGCAGUAUUGCUGCAUAGACGGGCUAAAUGUUUGUUUAUCAAACGAAUCGAAUAUUUAGAGUGACGAUU
....(((.((((((((.-...))))(((((.....)))))........(((((((((((....((....))..))))))))))).))))))).. ( -24.80)
>DroEre_CAF1 4103 92 + 1
UAAAAUGAUUGCAGCAA-AUUUAUUUGCAGUAUUGCUGCAUAUACCGA-AAAAUGUUUGUUUAUCAAACGAGUCGAGUAUUUGGAGUGGCAAUU
......((((((.((((-(....)))))......(((.((.(((((((-....((((((.....))))))..))).)))).)).))).)))))) ( -25.10)
>DroYak_CAF1 3984 81 + 1
UACUUUGCUCACAGCAAUAAAUAUUUGCAGUAUUGCUGCA-------------UGUUUGUUUAUCAAACGAGUCGCAUAUGUGGAGUGGCGGUU
.((((..((((((((((.......)))).....(((.((.-------------((((((.....)))))).)).)))..))).)))..).))). ( -20.80)
>consensus
UACUUUGCUCACAGCAA_AUUUAUUUGCAGUAUUGCUGCAUA_AC_G___AAAUGUUUGUUUAUCAAACGAGUCGAAUAUUUGGAGUGGCGAUU
.....((.((((.............(((((.....))))).............((((((.....))))))...............))))))... (-14.31 = -13.43 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 19,589,538 – 19,589,631
Length 93
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 73.57
Mean single sequence MFE -17.56
Consensus MFE -10.31
Energy contribution -9.77
Covariance contribution -0.55
Combinations/Pair 1.27
Mean z-score -1.94
Structure conservation index 0.59
SVM decision value 1.27
SVM RNA-class probability 0.938343
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19589538 93 - 22224390
AAUCGUCACUCUAAAUAUUCGAUUCGUUUGAUAAACAAACAUUUAGCCCGUCUAUGCAGCAAUACUGCAAGCGAAG-UCGCUGUGAGCAAAGUA
(((((..............))))).(((((.....)))))((((.((.((....(((((.....)))))((((...-.)))).)).)).)))). ( -17.84)
>DroEre_CAF1 4103 92 - 1
AAUUGCCACUCCAAAUACUCGACUCGUUUGAUAAACAAACAUUUU-UCGGUAUAUGCAGCAAUACUGCAAAUAAAU-UUGCUGCAAUCAUUUUA
..............((((.(((...(((((.....))))).....-))))))).((((((((..............-))))))))......... ( -17.94)
>DroYak_CAF1 3984 81 - 1
AACCGCCACUCCACAUAUGCGACUCGUUUGAUAAACAAACA-------------UGCAGCAAUACUGCAAAUAUUUAUUGCUGUGAGCAAAGUA
...(((............))).((((((((.....))))).-------------.(((((((((...........))))))))))))....... ( -16.90)
>consensus
AAUCGCCACUCCAAAUAUUCGACUCGUUUGAUAAACAAACAUUU___C_GU_UAUGCAGCAAUACUGCAAAUAAAU_UUGCUGUGAGCAAAGUA
.........................(((((.....)))))..............((((((((...((....))....))))))))......... (-10.31 =  -9.77 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:28 2006