Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,583,109 – 19,583,209 |
Length | 100 |
Max. P | 0.567850 |
Location | 19,583,109 – 19,583,209 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.72 |
Mean single sequence MFE | -35.71 |
Consensus MFE | -25.45 |
Energy contribution | -26.67 |
Covariance contribution | 1.21 |
Combinations/Pair | 1.33 |
Mean z-score | -1.37 |
Structure conservation index | 0.71 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19583109 100 + 22224390 CGAGUCCCCAUUCGCAGCGAACCGCAAGGCCGGUGCCAG---CGGCGCCGGCAAACAGGACUCGAACUGCCGCACCUGCAACGAUUUCAAGUCGUGGUCCAAG (((((((.........(((...)))...(((((((((..---.))))))))).....)))))))....(((((....)).(((((.....))))))))..... ( -41.50) >DroSec_CAF1 3034 100 + 1 GGAGUCCCCAUUCGCAGCGCACCGCAAGGCCGGUGCCAG---CGGUGCCGGCAAACAGGACUCGAACUGCCGCACCUGCAACGAUUUCAAGUCGUGGUCCAAG .((((((......((.(.(((((((..(((....))).)---))))))).)).....)))))).....(((((....)).(((((.....))))))))..... ( -38.00) >DroSim_CAF1 3604 100 + 1 GGAGUCCCCAUUCGCAGCGCACCGCAAGGCCGGUGCCAG---CGGUGCCGGCAAACAGGACUCGAACUGCCGCACCUGCAACGAUUUCAAGUCGUGGUCCAAG .((((((......((.(.(((((((..(((....))).)---))))))).)).....)))))).....(((((....)).(((((.....))))))))..... ( -38.00) >DroEre_CAF1 2980 97 + 1 GGAGUCCCCAUUCUCGGCAAACCGAAAGGCCGGCGG------CAGCACCGGCAAACAGGACUCAAACUGUCGCACUUGCAAUGAUUUCAAGUCCUGGUCCAAG (((..........((((....))))...(((((.(.------...).)))))...(((((((.(((..((.((....)).))..)))..))))))).)))... ( -30.20) >DroYak_CAF1 2867 103 + 1 GGAGUUUCCAUUCGCGGCGAACCGCAAGGCUGGCGCUAACGCCGGCGCCGGCAAACAGGACUCCAACUGCCGCACUUGCAAUGAUUUCAAGUCCUGGUCCAAG (((..........((((....))))...(((((((((......)))))))))...(((((((.........((....))..((....))))))))).)))... ( -39.70) >DroAna_CAF1 2740 91 + 1 GGACAGCUCAUUUGCAGCCCAUCGAAGAAC------UAA---CGG---CGGCAAGCAAGACUCCAACUGCCGCACGUGCAACGACUUCAAGUCGUGGUCCAAA ((((.((......))...............------..(---(((---(((((..............)))))).)))...(((((.....))))).))))... ( -26.84) >consensus GGAGUCCCCAUUCGCAGCGAACCGCAAGGCCGGUGCCAG___CGGCGCCGGCAAACAGGACUCGAACUGCCGCACCUGCAACGAUUUCAAGUCGUGGUCCAAG .((((((......((........))...(((((((((......))))))))).....)))))).....(((((....)).(((((.....))))))))..... (-25.45 = -26.67 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:25 2006