Locus 7860

Sequence ID X_DroMel_CAF1
Location 19,582,049 – 19,582,149
Length 100
Max. P 0.528594
window12893

overview

Window 3

Location 19,582,049 – 19,582,149
Length 100
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 78.07
Mean single sequence MFE -34.57
Consensus MFE -20.62
Energy contribution -21.05
Covariance contribution 0.42
Combinations/Pair 1.28
Mean z-score -1.45
Structure conservation index 0.60
SVM decision value -0.01
SVM RNA-class probability 0.528594
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19582049 100 - 22224390
ACUGGCCGCCGGAUU----UUGGGUUU-------GGGUUAGCUCUGCUCUGCUCUGCUCCUUCCUGUUCCGAGCAAUCUGAAUCUGGAGCAGAUCGCAGUGGUUAGACGUA
.((((((((......----..((((..-------(((....))).))))(((((((((((.....((((.((....)).))))..))))))))..)))))))))))..... ( -37.20)
>DroSec_CAF1 1973 100 - 1
ACUGGCCGCCGGAUU----UUGGGUUU-------GGGUUAGCUCUGCUCUGCUCUGCUCCUUCCUGCUCCGAGCAAUCUGAAUCUGGAGCAGUUCGCAGUGGUUAGACGUA
.((((((((((((((----(..((((.-------.((((.((((.((...))...((........))...))))))))..))))..))...)))))..))))))))..... ( -33.40)
>DroSim_CAF1 1979 100 - 1
ACUGGCCGCCGGAUU----UUGGGUUU-------GGGUUAGCUCUGCUCUGCUCUGCUCCUUCCUGGUCCGAGCAAUCUGAAUCUGGAGCAGUUCGCAGUGGUUAGACGUA
.((((((((((((((----(..((((.-------.((((.((((.((........)).((.....))...))))))))..))))..))...)))))..))))))))..... ( -34.90)
>DroEre_CAF1 1955 89 - 1
ACUGGCCGCCGGGU-----UUGGGUUU-------GGGUUAGCUCUUCU----------CCGACUUGCUCCGAGCAAUUUGAAUCUGGAGCAAUUCGCAGUGGUUAGACGUA
.((((((((.(((.-----..(((((.-------.....)))))..))----------)(((.(((((((((..........)).))))))).)))..))))))))..... ( -30.80)
>DroYak_CAF1 1831 89 - 1
ACUGGCCGCCGGGU-----UUGGGUUU-------GGGUUAGCUCUGCU----------CCGUCCUGCUCCGAGCAAUCUGAACCUGGAGCAGUUCGCAGUGGUUAGACGUA
.((((((((....(-----(..((((.-------.((((.((((.((.----------.......))...))))))))..))))..))((.....)).))))))))..... ( -35.50)
>DroAna_CAF1 1681 99 - 1
ACUGGCCGCCGGAUUGGGUUUCGGUUUCGAUUUGGGGUUAGCUCUGCUCUUC------------AAGGCGGAGCAGCUUAACAGCUUAACGGCUCGCAAUGGUUAGACAUA
.((((((((((((......))))))......((((((((.((((((((....------------..))))))))((((....))))....))))).))).))))))..... ( -35.60)
>consensus
ACUGGCCGCCGGAUU____UUGGGUUU_______GGGUUAGCUCUGCUCUGC______CCUUCCUGCUCCGAGCAAUCUGAAUCUGGAGCAGUUCGCAGUGGUUAGACGUA
.((((((((((((((....(..(((((.......(((((.((((..........................))))))))))))))..)...))))))..))))))))..... (-20.62 = -21.05 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:19 2006