Locus 786

Sequence ID X_DroMel_CAF1
Location 2,186,141 – 2,186,237
Length 96
Max. P 0.876761
window1275 window1276

overview

Window 5

Location 2,186,141 – 2,186,237
Length 96
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 91.75
Mean single sequence MFE -23.13
Consensus MFE -18.64
Energy contribution -19.20
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -3.01
Structure conservation index 0.81
SVM decision value 0.90
SVM RNA-class probability 0.876761
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2186141 96 + 22224390
UAAUAUCAAGGAUCUUUAACAUUUCUGAAAUAUUGGGA-GAUAUAAACACAUACUUAUUCCGCUUCCGGUUGAGGAACUUUCUGAAUUUCCUUGAAU
.....(((((((..((((....((((.....(((((((-(..((((........))))....))))))))...)))).....))))..))))))).. ( -21.60)
>DroSec_CAF1 57760 97 + 1
UAAUAUCAAGGAUCUUUCGCAUUUCUGAAAUAUUAGGAAUAUGUAAACACAUACUUAUUCCGCUUCCGCUUGAGGAACUAUUCAAGUUUCCUUGAAU
.....(((((((..(((((......))))).....((((((.(((......))).))))))......(((((((......))))))).))))))).. ( -23.90)
>DroSim_CAF1 58094 97 + 1
UAAUAUCAAGGAUCUUUCGCAUUUCUGAAAUAUUAGGAAUAUGUAAACACAUACUUAUUCCGCUUCCGCUUGAGGAACUAUUCAAGUUUCCUUGAAU
.....(((((((..(((((......))))).....((((((.(((......))).))))))......(((((((......))))))).))))))).. ( -23.90)
>consensus
UAAUAUCAAGGAUCUUUCGCAUUUCUGAAAUAUUAGGAAUAUGUAAACACAUACUUAUUCCGCUUCCGCUUGAGGAACUAUUCAAGUUUCCUUGAAU
.....(((((((..(((..................((((((.(((......))).))))))..((((......))))......)))..))))))).. (-18.64 = -19.20 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 2,186,141 – 2,186,237
Length 96
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 91.75
Mean single sequence MFE -22.93
Consensus MFE -19.57
Energy contribution -19.47
Covariance contribution -0.10
Combinations/Pair 1.18
Mean z-score -2.53
Structure conservation index 0.85
SVM decision value 0.86
SVM RNA-class probability 0.867621
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2186141 96 - 22224390
AUUCAAGGAAAUUCAGAAAGUUCCUCAACCGGAAGCGGAAUAAGUAUGUGUUUAUAUC-UCCCAAUAUUUCAGAAAUGUUAAAGAUCCUUGAUAUUA
..(((((((...........((((......))))(.(((....(((((....))))).-))))((((((.....)))))).....)))))))..... ( -15.40)
>DroSec_CAF1 57760 97 - 1
AUUCAAGGAAACUUGAAUAGUUCCUCAAGCGGAAGCGGAAUAAGUAUGUGUUUACAUAUUCCUAAUAUUUCAGAAAUGCGAAAGAUCCUUGAUAUUA
(((((((....)))))))..........((....))((((((.(((......))).))))))(((((((...((....(....).))...))))))) ( -26.70)
>DroSim_CAF1 58094 97 - 1
AUUCAAGGAAACUUGAAUAGUUCCUCAAGCGGAAGCGGAAUAAGUAUGUGUUUACAUAUUCCUAAUAUUUCAGAAAUGCGAAAGAUCCUUGAUAUUA
(((((((....)))))))..........((....))((((((.(((......))).))))))(((((((...((....(....).))...))))))) ( -26.70)
>consensus
AUUCAAGGAAACUUGAAUAGUUCCUCAAGCGGAAGCGGAAUAAGUAUGUGUUUACAUAUUCCUAAUAUUUCAGAAAUGCGAAAGAUCCUUGAUAUUA
..(((((((..((.(((((.((((......))))..((((((.(((......))).))))))...))))).)).....(....).)))))))..... (-19.57 = -19.47 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:48 2006