Locus 7851

Sequence ID X_DroMel_CAF1
Location 19,561,265 – 19,561,369
Length 104
Max. P 0.972385
window12873

overview

Window 3

Location 19,561,265 – 19,561,369
Length 104
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 83.99
Mean single sequence MFE -38.50
Consensus MFE -33.49
Energy contribution -32.27
Covariance contribution -1.22
Combinations/Pair 1.23
Mean z-score -2.89
Structure conservation index 0.87
SVM decision value 1.69
SVM RNA-class probability 0.972385
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19561265 104 + 22224390
AACAACCGAUAACCGAUAACCAUUGAACGAUUGUGCUCAACUCCGAUUGGCUGGCGUUUUGGGUGACGUUGGUCAAUCGGCUUUCAGCACAGGCAUCA-GGAAGG
.....(((((...((((....))))...(.(((((((.((..(((((((((..(((((......)))))..)))))))))..)).))))))).)))).-)).... ( -37.30)
>DroPse_CAF1 28000 103 + 1
-ACUACCGAUA-UCGAUAGCGCCCUCCCUAUUGUGCUCAGCUUCGAUUGGCGAGCGUUUUGGGUGACGCUGGUCAAUCGGCAUUCAGCACAAGGGACAAAGAGAG
-.(((.((...-.)).))).....(((((..((((((.((..(((((((((.((((((......)))))).)))))))))..)).)))))))))))......... ( -40.30)
>DroSim_CAF1 21727 104 + 1
AACAACCGUUAACCGAUAACCAAUGAACGAUUGUGCUCAACUCCGAUUGGCUGGCGUUUUGGGUGACGUUGGUCAAUCGGCUUUCAGCACAGGCAUCA-GGAAGG
.....((((((.....))))...(((....(((((((.((..(((((((((..(((((......)))))..)))))))))..)).)))))))...)))-)).... ( -38.10)
>DroEre_CAF1 24871 103 + 1
-AUAACCAAUAACCGAUAACCAAUGAACGAUUGUGCUCAACUCCGAUUGGCUGGCGUUUUGGGUGACGUUGGUCAAUCGGUUUUCAGCACAGGCAUCA-GGAAGG
-..................((..(((....(((((((.((..(((((((((..(((((......)))))..)))))))))..)).)))))))...)))-)).... ( -37.50)
>DroYak_CAF1 24174 103 + 1
-AUAACCGAUAACAGAUAACCAAUGAACGAUUGUGCUCAACUCCGAUUGGCUGGCGUUUUGGGUGACGUUGGUCAAUCGGUUUUCAGCACAGGCAUCA-GGAAGG
-..................((..(((....(((((((.((..(((((((((..(((((......)))))..)))))))))..)).)))))))...)))-)).... ( -37.50)
>DroPer_CAF1 28261 103 + 1
-ACUACCGAUA-UCGAUAGCGCCCUCCCUAUUGUGCUCAGCUUCGAUUGGCGAGCGUUUUGGGUGACGCUGGUCAAUCGGCAUUCAGCACAAGGGACAAAGAGAG
-.(((.((...-.)).))).....(((((..((((((.((..(((((((((.((((((......)))))).)))))))))..)).)))))))))))......... ( -40.30)
>consensus
_ACAACCGAUAACCGAUAACCAAUGAACGAUUGUGCUCAACUCCGAUUGGCUGGCGUUUUGGGUGACGUUGGUCAAUCGGCUUUCAGCACAGGCAUCA_GGAAGG
............................(.(((((((.((..((((((((((((((((......))))))))))))))))..)).))))))).)........... (-33.49 = -32.27 +  -1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:00 2006