| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,558,600 – 19,558,718 |
| Length | 118 |
| Max. P | 0.517427 |
| Location | 19,558,600 – 19,558,718 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.94 |
| Mean single sequence MFE | -48.55 |
| Consensus MFE | -32.18 |
| Energy contribution | -32.52 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19558600 118 + 22224390 UUC--GUGCAGACAACUAUCGCAGCUGUGGCACCGCACCAAUGUGCCCGGACUGGCGACCAUUGGCAGCGGACUGGCCGCCGCCCUGGUGGCGCUCACUGUGCGCCUGGAGAUCCUCGUC ..(--(..(((..........((((((.(((((.........)))))))).)))((.((((..(((.((((.....)))).))).)))).)).....)))..))...((....))..... ( -45.50) >DroVir_CAF1 30783 115 + 1 U-----UGCAGGCAAUUGUCGCAUCUGUGGCAACGCACAAAUGUGCCCGGCCUGGCAACGCUGGGCAGCGGUCUGGCAGCCGCCCUGGUGGCGCUCACCGUACGCCUGGACAUACUUGUC .-----..(((((..(((((((....)))))))..........((((((((..(....)))))))))(((((..(((.(((((....)))))))).)))))..)))))((((....)))) ( -54.20) >DroGri_CAF1 27980 115 + 1 U-----UGCAGGCAACUGUCGCAUCUGUGGCAGCGCACAAACGUGCCGGGCUUGGCGACUUUGGGCAGCGGUCUGGCCGCUGCUCUGGUGGCAUUGACUGUGCGCCUGGACAUACUCGUC .-----..(((((..(((((((....))))))).(((((...(((((..((...)).(((..(((((((((.....))))))))).))))))))....))))))))))(((......))) ( -53.90) >DroWil_CAF1 25786 120 + 1 UUGCAACGCAGACAACUGUCGCAAUUGUGGCAGAGGACCAAUGUCCCUGGAAUAGCCACCAUUGGCAGUGGUCUGGCUGCUGCCCUUGUGGCCCUCACCAUUCGCCUAGAGAUUCUCGUG .....((((((....(((((((....))))))).((((....)))))))((((.(((((.(..(((((..(.....)..)))))..)))))).(((............))))))).))). ( -41.00) >DroMoj_CAF1 28923 115 + 1 U-----UUCAGGCAAUUGUCGCAUCUGUGGCAGCGCACUAACGUGCCCGGCUUGGCGACGGUGGGCAGCGGACUGGCCGCCGCGCUGGUUGCCCUAACCGUGCGGCUGGACAUUCUCGUG .-----(((((.(...((((((....))))))((((((....))))..((((..(((.((((((.(((....))).)))))))))..)..)))........))).))))).......... ( -50.50) >DroAna_CAF1 27553 112 + 1 --------UAGGCAACUAUCGCAACUGUGGCAACGCACCAAUGUGCCCGGCCUAGCGACGAUUGGCAGCGGACUGGCCGCCGCUCUGGUGGCCCUCACCGUUCGCCUGGAGAUCCUCGUC --------(((((......((((..((((....))))....))))....)))))..(((((..((((((((...(((((((.....)))))))....))))).))).((....))))))) ( -46.20) >consensus U_____UGCAGGCAACUGUCGCAUCUGUGGCAGCGCACCAAUGUGCCCGGCCUGGCGACGAUGGGCAGCGGACUGGCCGCCGCCCUGGUGGCCCUCACCGUGCGCCUGGACAUACUCGUC ........(((((..(((((((....))))))).((((....))))...)))))((((..((((((.((((...(((((((.....)))))).)...))))..)))....)))..)))). (-32.18 = -32.52 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:59 2006