Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,183,375 – 2,183,488 |
Length | 113 |
Max. P | 0.927435 |
Location | 2,183,375 – 2,183,488 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.36 |
Mean single sequence MFE | -41.08 |
Consensus MFE | -23.10 |
Energy contribution | -24.53 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.31 |
Mean z-score | -2.07 |
Structure conservation index | 0.56 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2183375 113 + 22224390 --GCUUCCUGACUCCUCGCAGGAUCGUCGACUAUUGUCGUCGUCUGCUGAGCACGGACCUGGUCACGGCCCUUCGUCCGUUCUACCAGGCCAUUCGGAC-----GGAUGGCCUGGCUCAC --((.(((((........))))).((.((((....)))).))...))(((((((((((..(((....)))....)))))).....((((((((((....-----))))))))))))))). ( -51.00) >DroSec_CAF1 55047 113 + 1 --GCUUCCUGACUCCUCGCAGGAUCGUCGACUAUUGUCGUCGUCUGCUGAGCACGGACUUGGUCACGGCCCUUCGUCCGUUCUACCAGGCCAUUCGAAC-----GGAUGGCCUGACUCAC --((.(((((........))))).((.((((....)))).))...))((((.((((((..(((....)))....)))))).....((((((((((....-----)))))))))).)))). ( -46.60) >DroSim_CAF1 55354 113 + 1 --GCUUCCUCACUCCUCGCAGGAUCGUCGACUAUUGUCGUCGUCUGCUGAGCACGGACCUGGUCACGGCCCUUCGUCCGUUCUACCAGGCCAUUCGAAC-----GGAUGGCCAGACUCAC --...............(((((..((.((((....)))).)))))))(((((((((((..(((....)))....)))))).......((((((((....-----)))))))).).)))). ( -43.00) >DroEre_CAF1 59112 113 + 1 --GCUUCCUGGCUCCUCGCAGGAUUGUCGACUAUUGUCGUCGUCUGCUGAGCACGGACUUGGUCACCGCACUCCGUCCGUUCUACCAGGCCAUUCAGAC-----GGAUAGCCUCGCUCAC --(((....))).....(((((...(.((((....)))).).)))))(((((((((((..(((......)))..))))))......((((.((((....-----)))).)))).))))). ( -38.80) >DroWil_CAF1 61382 108 + 1 AUGCAAGGAGGC-UCUCGCUGGA--------UAAUGAG-GCGAUCUUUGAGCAGCGACCUAAACGCAGCUCUUCAGCCCUUCUAUGCGGCUGUGCACCCAAAAUAUAUGGGCAAA--CAU .(((((((((((-(((((((...--------......)-)))).....)))).(((.......)))..)))))((((((......).)))))))))((((.......))))....--... ( -32.20) >DroYak_CAF1 59244 113 + 1 --GCUUCCUGGCUCCUCGCCGGAUUGUCGACUAUUGUCGUCGUCUGCUGAGUACGGAUUUGGUCACCGCACUCCGUCCGUUCUACCAGGCCAUUCAGAC-----GGACAGCCUCGCUCAC --(((..(((((.....)))))...(.((((....)))).)(((((((((((((((((..(((......)))..))))))...........)))))).)-----)))))))......... ( -34.90) >consensus __GCUUCCUGACUCCUCGCAGGAUCGUCGACUAUUGUCGUCGUCUGCUGAGCACGGACCUGGUCACGGCCCUUCGUCCGUUCUACCAGGCCAUUCAGAC_____GGAUGGCCUGACUCAC ..............(((((((...((.((((....)))).)).)))).))).((((((..((........))..)))))).......((((((((.........))))))))........ (-23.10 = -24.53 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:46 2006