| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,557,577 – 19,557,676 |
| Length | 99 |
| Max. P | 0.649555 |
| Location | 19,557,577 – 19,557,676 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.99 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -19.00 |
| Energy contribution | -19.67 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19557577 99 - 22224390 AGAUGACCGACUUGCUGGCACCCAUCGCCAGGACGCAGGUCAUGAGCAGCGUGAUGCCGAAGGCAAUAAAGUCCGGUGGUUUGCCUG--------UGAGUGUAGAAG----- .........(((..(.((((...((((((.((((....((((((.....))))))(((...)))......)))))))))).)))).)--------..))).......----- ( -34.70) >DroVir_CAF1 29616 104 - 1 AUAUAACUGAUUUGCUGGCGCCCAUCGCCAAGACGCUGGUCAUGAUGAGCGUUAUGCCAAAGGCAAUGAAGUCCGGUGGCUUGCCUG--------UUCGCCAAAAAACGGGG ......(((.(((..(((((..((..((...((((((.((....)).))))))..((((..(((......).))..))))..)).))--------..)))))..)))))).. ( -32.60) >DroGri_CAF1 27117 100 - 1 AAAUAACUGAUUUGCUGGCGCCCAUCGCCAAAACGCAGGUCAUGAUGAGCGUUAUGCCAAAGGCUAUAAAGUCAGGUGGUUUGCCUG--------CAAGCCAAACAAA---- ......(((((((..((((((.(((((((........)))...)))).)))))).(((...)))....))))))).(((((((....--------)))))))......---- ( -31.50) >DroWil_CAF1 24968 99 - 1 AAAUAACAGAUUUACUGGCGCCCAUGGCCAAUAUGCAGGUCAUGAUGAGCGUUAUGCCAAAGGCUAUAAAAUCAGGUGGUUUGCCUG--------UGAGGAUAGAAA----- ..........(((((.(((((((((((((........))))))).(((...(((((((...))).))))..)))...)))..))).)--------))))........----- ( -26.80) >DroMoj_CAF1 27627 89 - 1 AGAUAACAGAUUUACUGGCGCCCAUCGCCAAAACGCUGGUCAUGAUGAGUGUUAUGCCAAAGGCUAUAAAGUCAGGUGGUUUGCCUA--------GA--------------- ..............((((.((..((((((.......(((.((((((....)))))))))..((((....)))).))))))..)))))--------).--------------- ( -25.30) >DroPer_CAF1 24510 107 - 1 AUAUGACCGACUUGCUGGCGCCCAUCGCCAAUACGCAGGUCAUGAGGAGCGUUAUGCCAAAGGCUAUAAAGUCCGGUGGUUUGCCUGAACGCAUACGCAUAUAAAAG----- ((((((((((((((((((((.....)))))....)))))))....(((...(((((((...))).))))..)))))).((.(((......))).)).))))).....----- ( -33.80) >consensus AAAUAACAGAUUUGCUGGCGCCCAUCGCCAAAACGCAGGUCAUGAUGAGCGUUAUGCCAAAGGCUAUAAAGUCAGGUGGUUUGCCUG________UGAGCAUAAAAA_____ ........((((((((((((.....)))))....)))))))......((.((...((((..(((......)))...))))..)))).......................... (-19.00 = -19.67 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:58 2006