Locus 7843

Sequence ID X_DroMel_CAF1
Location 19,543,722 – 19,543,828
Length 106
Max. P 0.619255
window12859

overview

Window 9

Location 19,543,722 – 19,543,828
Length 106
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 73.24
Mean single sequence MFE -25.55
Consensus MFE -14.44
Energy contribution -15.88
Covariance contribution 1.44
Combinations/Pair 1.25
Mean z-score -1.70
Structure conservation index 0.57
SVM decision value 0.17
SVM RNA-class probability 0.619255
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19543722 106 - 22224390
CACGAUGAUGCACAAAAACUUCUGGUCAAGAUCAUAAUGGCAUGUCCAUCUAUGUAUCUCUUGGAAAACUCAGGAGAUAUUAUCGAUGUUUUGAGCUAGAGAUAUA-----------
...................(((((((((((((((((((((.....)))).))))((((((((((.....))))))))))........))))))).)))))).....----------- ( -25.40)
>DroSec_CAF1 9096 113 - 1
CACGAUGAUGCACAAGCACUUCUGGUCAAGAUCAUAAUGGCACGUCCAU----AUAUCUCUUGGAAAAUUUAGGAGAUAUUAUCUAUGUUUCGAGCUAGAGAUAUAGAGGGAUAAUU
((..(((((((....)))..(((.....)))))))..))....((((..----((((((((((((...))))))))))))..((((((((((......)))))))))).)))).... ( -30.80)
>DroSim_CAF1 9311 113 - 1
CACGAUGAUGCACAAGCACUUCUGGUCAAGAUCAUAAUGGCACGUCCAU----AUAUCUCUUGGAAAAUUUAGGAGAUAUUAUCUAUGUUUUGAGCUAGAGAUAUAGACGGAUAAUU
((..(((((((....)))..(((.....)))))))..))....((((..----((((((((((((...))))))))))))..((((((((((......)))))))))).)))).... ( -28.30)
>DroEre_CAF1 8991 86 - 1
-------------AAGCACUUCUGGCCAAAACCAUAAGGGCACGUCCAU--------UUCUUGAAAAAUUCCGGAGAUGAUAUCGAAGUUUUAAGGCUGAGAUUUU---U-------
-------------..((.(((.(((......))).))).)).....(((--------((((.((.....)).)))))))..(((..((((....))))..)))...---.------- ( -17.70)
>consensus
CACGAUGAUGCACAAGCACUUCUGGUCAAGAUCAUAAUGGCACGUCCAU____AUAUCUCUUGGAAAAUUCAGGAGAUAUUAUCGAUGUUUUGAGCUAGAGAUAUA___G_______
...................(((((((((((((....((((.....))))....(((((((((((.....))))))))))).......))))))).))))))................ (-14.44 = -15.88 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:47 2006