Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,532,770 – 19,532,860 |
Length | 90 |
Max. P | 0.550017 |
Location | 19,532,770 – 19,532,860 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 82.68 |
Mean single sequence MFE | -25.42 |
Consensus MFE | -17.75 |
Energy contribution | -18.12 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.10 |
Mean z-score | -1.55 |
Structure conservation index | 0.70 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19532770 90 - 22224390 AGAGCUCUGGAGGCUGGAGCACGGACACUACUGACACAGAUACGCGGACGCGCGUAAGUGGAGACACAGACGGUGUGUGAGACAAAAAGA ...((((..(...)..)))).(..((((.((((.......((((((....)))))).(((....)))...))))))))..)......... ( -31.10) >DroSec_CAF1 851 89 - 1 GGAGCUCC-AAGGCUGGAGCACGGACACUACUGAAACAGAUACGCGGACGCACGUAAGGGGAGACACAGACGGUGUGUGAGAUGGAGAGA ...(((((-(....)))))).((.(((((.(((.......((((.(....).))))...(....).)))..))))).))........... ( -24.50) >DroSim_CAF1 857 89 - 1 GGAGCUCC-AAGACUGGAGCACGGACACUACUGAAACAGAUACGCGGACGCACGUAAGGGGAGACACAGACGGUGUGUGGGAUGGAGAGA ...(((((-(....)))))).(((......))).........(.((.((((.(((....(....)....))))))).)).)......... ( -25.20) >DroYak_CAF1 852 81 - 1 AGAGCUCC-AAGGUUGGAGCACGGACAGUACUGACACAGAUACGAUGACGCACGUAAGGGGCGACACAGAAAAGGUGAGUGA-------- ...(((((-(....)))))).(((......))).(((...........(((.(....)..))).(((.......))).))).-------- ( -20.90) >consensus AGAGCUCC_AAGGCUGGAGCACGGACACUACUGAAACAGAUACGCGGACGCACGUAAGGGGAGACACAGACGGUGUGUGAGAUGGAGAGA ...(((((.......))))).((.(((((.(((.......((((........))))...(....).)))..))))).))........... (-17.75 = -18.12 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:44 2006