Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,183,043 – 2,183,217 |
Length | 174 |
Max. P | 0.644516 |
Location | 2,183,043 – 2,183,140 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.42 |
Mean single sequence MFE | -30.17 |
Consensus MFE | -15.52 |
Energy contribution | -17.59 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.30 |
Structure conservation index | 0.51 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2183043 97 - 22224390 UGCAACUG------CAGCAAAAAGAUGAAGUUUUUCACUAAAAAAAAUUAACUGUAGUUGCACCGAGUGGUGGUAAGUAGAGAAACUGCUGUACUCCACUCA--------------G- ((((((((------(((((......)).(((((((.......)))))))..)))))))))))..((((((.(((((((((.....))))).)))))))))).--------------.- ( -33.20) >DroSec_CAF1 54719 112 - 1 UGCAACUGCACAUGCAGCAAACAGAUGAAGUUUUUCACUAAA--AAAUUAACUGUAGUUGCCCCGAGUG---GCAAGUAGAGAAACUGCUGUCCUCCACUCCACUCGCCAGUGUGUG- .......(((((((((((..((((.(((..((((.....)))--)..))).)))).)))))..((((((---(..(((.(((..((....)).))).))))))))))...)))))).- ( -31.90) >DroSim_CAF1 55026 112 - 1 UGCAACUGCACAUGCAGCAAACAGAUGAAGUUUUUCACUAAA--AAAUUAACUGUAGUUGCCCCGAGUG---GCAAGUAGAGAAACUGCUGUCCUCCACUCCGCUCGCCAGUGUGUG- .......(((((((((((..((((.(((..((((.....)))--)..))).)))).)))))..((((((---(..(((.(((..((....)).))).))))))))))...)))))).- ( -31.50) >DroEre_CAF1 58779 108 - 1 UGCAUAUGU--GUACAGCAAACAGAUGAAGUUUUUCACAAAAAAAAAUUAACUCUAGUUGCCCCGAGUG---GUAAGCAGAGAAACUGCUGUUCUACAG-----UUACCAGUGUGUGU .((((((..--((((.((((..(((...(((((((.......)))))))...)))..)))).....(((---(..(((((.....)))))...)))).)-----.)))..)))))).. ( -24.10) >consensus UGCAACUGC__AUGCAGCAAACAGAUGAAGUUUUUCACUAAA__AAAUUAACUGUAGUUGCCCCGAGUG___GCAAGUAGAGAAACUGCUGUCCUCCACUCC__UCGCCAGUGUGUG_ .(((((((((...............((((....))))...............)))))))))...(((((......(((((.....)))))......)))))................. (-15.52 = -17.59 + 2.06)
Location | 2,183,106 – 2,183,217 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.42 |
Mean single sequence MFE | -23.53 |
Consensus MFE | -9.43 |
Energy contribution | -10.44 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.13 |
Mean z-score | -2.05 |
Structure conservation index | 0.40 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2183106 111 - 22224390 CUAGAGAAUUCAUUCAUGUUUACCAACUUGUUUUUGGGCA-AACAAACACCUAGCCAGGAAAUGCGAAAUUCUGCACCUGCAACUG------CAGCAAAAAGAUGAAGUUUUUCACUA ...(((((....(((((.(((........(((((..(((.-............)))..)))))(((......)))..((((....)------)))...))).)))))..))))).... ( -21.12) >DroSec_CAF1 54791 111 - 1 CUAGAUAGUUAAUUCAUGUUUACCAACUU-UUUUUGGGCA-----AACACCUAGC-AGGAAAUGCGAAAUGCUGCACCUGCAACUGCACAUGCAGCAAACAGAUGAAGUUUUUCACUA .......(((..(((.(((((.((((...-...))))..)-----))))....((-(.....)))))).(((((((..(((....)))..))))))))))((.((((....)))))). ( -27.10) >DroSim_CAF1 55098 111 - 1 CUAGAUAGUUCAUUCAUGUUUGCCAACUU-UUUUUGGGCA-----AACACCUAGC-AGGAAAUGCGAAAUGCUGCACCUGCAACUGCACAUGCAGCAAACAGAUGAAGUUUUUCACUA ...((.(.((((((..((((((((.....-......))))-----))))....((-(.....)))....(((((((..(((....)))..)))))))....)))))).)...)).... ( -32.90) >DroEre_CAF1 58849 107 - 1 CUAAAGCAUUCAUUUAUAUUUACCAACUU---UUUGCGC-----AAACACCUAGC-AGAAAAUGCAAAAUUCUGCACCUGCAUAUGU--GUACAGCAAACAGAUGAAGUUUUUCACAA ..(((((.(((((.............((.---(((((..-----..((((.((((-((....((((......)))).)))).)).))--))...))))).))))))))))))...... ( -20.51) >DroYak_CAF1 58975 100 - 1 -------UUGCAUUCAUAUUUACCAACUU---UUUGGGCAUAACAAACACCUAGC-AGGAAAUGCAA-ACUCGCCACCUGCAUA------CACAGCAAACCUAUGAAGUUUUUCACUA -------((((...........((((...---.))))................((-(((....((..-....))..)))))...------....)))).................... ( -16.00) >consensus CUAGAGAAUUCAUUCAUGUUUACCAACUU_UUUUUGGGCA____AAACACCUAGC_AGGAAAUGCGAAAUUCUGCACCUGCAACUG____UACAGCAAACAGAUGAAGUUUUUCACUA ............(((((.....((((.......))))((..............((.(((...((((......)))))))))...(((....)))))......)))))........... ( -9.43 = -10.44 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:45 2006