| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,524,859 – 19,524,976 |
| Length | 117 |
| Max. P | 0.603907 |
| Location | 19,524,859 – 19,524,976 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.28 |
| Mean single sequence MFE | -36.43 |
| Consensus MFE | -24.94 |
| Energy contribution | -24.42 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19524859 117 + 22224390 UGCGCCUCGCUGAGGAUGUCCAGGUUGCUCUGGUUCUCCUCAAUCUUGUGCGGCGCGAUCUCGGAGCGCAGUGUCUGCAGUUGACUUUGCACCUGCU---UGGAGUUGCGCAGGUAGUCG ...(((((((((((((...(((((....)))))...)))))).......)))((((((.(((.((((((((.(((.......))).))))....)))---).)))))))))))))..... ( -46.21) >DroVir_CAF1 8503 120 + 1 UGCGCCUCGCUGAGUAUGUCCAGGUUGCUCUGGUUCUGUUCAAUCUUGUGUGGUGCUAUCUCGCUGCGCAACGUUUGCAGCUGGUUCUGAACCUGCUUCUUGGACUUGCGCAGAUACUCG ((((((((...)))...(((((((..((...(((((.((((((.((((((..(((......)))..))))).).))).))).......))))).))..)))))))..)))))........ ( -40.10) >DroGri_CAF1 5830 120 + 1 UGCGCCUCGCUGAGUAUAUCCAGAUUGCUCUGAUUUUCCUCAAUCUUGUGUGGCGCUAUCUCGCUCCGCAACGUUUGCAAUUGAUUCUGCACUUGCUUCUUGGACUUGCGCAGAUACUCC .(((((.(((.(((((.........))))).((((......))))..))).)))))(((((((((((((((....((((........)))).)))).....)))...))).))))).... ( -32.30) >DroWil_CAF1 5440 120 + 1 UGCGCUUCACUGAGUAUAUCGAAAUUACUCUGAUUUUCUUCAAUUUUAUGCGGUGCAAUCUCUGAGCGUAAUGUCUGCAAUUGAUUUUGCACUUGAUUCUUUGUCUUACGUAAAUAUUCC ((((((.((..(((((.........)))))(((......)))......)).))))))........((((((....(((((......)))))...(((.....)))))))))......... ( -22.90) >DroMoj_CAF1 8311 120 + 1 UGCGCCUCGCUGAGUAUAUCCAGAUUACUUUGAUUCUGUUCAAUUUUAUGUGGUGCGAUUUCACUGCGCAACGUUUGCAAUUGAUUUUGCACCUGUUUCUUGGACUUGCGCAGGUAUUCC .(((((.((..((((.....((((..........))))....))))..)).))))).......((((((((.((.(((((......)))))((........))))))))))))....... ( -33.00) >DroPer_CAF1 14607 120 + 1 UGGGCCUCACUGAGUAUGUCGAGGUUGCUCUGGUUCUCUUCGAUCUUGUGUGGUGCGAUCUCGGAGCGGAGGGUCUGCAGCUGGUUCUGCACCUGCUUCUUGGACUUGCGCAGAUACUCC ..((((((((.......)).))))))(((((((......((((((......))).)))..)))))))((((..(((((.((.(((((.((....)).....))))).)))))))..)))) ( -44.10) >consensus UGCGCCUCGCUGAGUAUAUCCAGAUUGCUCUGAUUCUCUUCAAUCUUGUGUGGUGCGAUCUCGCAGCGCAACGUCUGCAAUUGAUUCUGCACCUGCUUCUUGGACUUGCGCAGAUACUCC .(((((.(((.(((((.........)))))(((......))).....))).))))).........((((((.((((((((.((......)).)))).....))))))))))......... (-24.94 = -24.42 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:40 2006