| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,523,196 – 19,523,301 |
| Length | 105 |
| Max. P | 0.786765 |
| Location | 19,523,196 – 19,523,301 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 91.08 |
| Mean single sequence MFE | -23.33 |
| Consensus MFE | -20.37 |
| Energy contribution | -20.93 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19523196 105 - 22224390 UUGUCUAAUUCAAGAUCUUCAAAGGGUGUUUCUACCCUAUACACCUUGUUAUGUUCCGUUAUUACGCGGAGUAAUUAUAAUAAGAGAACUUUAUUUAAAGUUUAA ..((((......))))......((((((....))))))......(((((((((((((((......))))))....))))))))).(((((((....))))))).. ( -24.00) >DroSec_CAF1 7824 104 - 1 UUGUCUAAUUCAAGAUCUUCAUAGGGUGUU-CUACCUUAUACGUUUUGUUAUGUUCCGUUAUUACGCGGCGUAGUUAUAAUUAGAGAACUUAACUUAGAGUUUAA ...(((((((((((((....((((((((..-.))))))))..))))))((((((..(((....)))..))))))....)))))))((((((......)))))).. ( -23.00) >DroSim_CAF1 6100 104 - 1 UUGUCUAAUUCAAGAUCUUCAUAGGGUGUU-UUACCUUAUACGUUUUGUUAUGUUCCGUUAUUACGCGGCGUAGUUAUAAUUAGAUAACUUUAUUUAGAGUUUAA .(((((((((((((((....((((((((..-.))))))))..))))))((((((..(((....)))..))))))....)))))))))(((((....))))).... ( -23.00) >consensus UUGUCUAAUUCAAGAUCUUCAUAGGGUGUU_CUACCUUAUACGUUUUGUUAUGUUCCGUUAUUACGCGGCGUAGUUAUAAUUAGAGAACUUUAUUUAGAGUUUAA ...(((((((((((((....((((((((....))))))))..))))))((((((..(((....)))..))))))....)))))))((((((......)))))).. (-20.37 = -20.93 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:39 2006