Locus 7836

Sequence ID X_DroMel_CAF1
Location 19,521,809 – 19,521,929
Length 120
Max. P 0.742741
window12848

overview

Window 8

Location 19,521,809 – 19,521,929
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.83
Mean single sequence MFE -39.42
Consensus MFE -33.54
Energy contribution -34.54
Covariance contribution 1.00
Combinations/Pair 1.13
Mean z-score -1.54
Structure conservation index 0.85
SVM decision value 0.45
SVM RNA-class probability 0.742741
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19521809 120 - 22224390
CACGUAUCGCACCUUCCAGUUUGGCAUCAUCAUCUUCGGCUUGAGCUCCUGUGCGGGCCUAAGUGUCUGCACCAAUGUGACUUUCUACAUGGACUGGAUCUGGGAUGCUCUGGUUAACUU
...(((((.((...((((((...(((....((.(((.((((((.((....)).)))))).)))))..))).(((.((((......)))))))))))))..)).)))))............ ( -36.60)
>DroSec_CAF1 6446 120 - 1
CAGGUAUCGCACCUUCCAGUUCGGCAUCAUCAGCUUCGGCUUGAGUUCCUGUGCGGGCCUAAGUGUCUGCACCAAUGUGACUCACUACGUGGACUGGAUCUGGGAUGCUCUGGUCAUCUC
((((((((.((...(((((((((.(......(((....)))(((((..(.((((((((......))))))))....)..)))))....))))))))))..)).))))).)))........ ( -47.70)
>DroSim_CAF1 4732 120 - 1
CAGGUAUCGCACCUUCCAGUUCGGCAUCAUCAGCUUCGGCUUGAGUUCCUGUGCGGGCCUAAGUGUCUGCACCAAUGUGACUCACUACGUGGACUGGAUCUGGGAUGCUCUGGUCAUCUC
((((((((.((...(((((((((.(......(((....)))(((((..(.((((((((......))))))))....)..)))))....))))))))))..)).))))).)))........ ( -47.70)
>DroEre_CAF1 5958 120 - 1
CAGGUAUCGCACCAUCCAGUUCGGCAUCAUCAGCUUCGGCUUAAGUUCCUGCGCAGGCUUAACUGUCUGCACCAAUGUGGCUCAGUACAUGGACUGGAUCUGGGAUGUUCUGAAUAGCUC
((((...((..(((((((((((((.......(((....)))...........((((((......)))))).)).(((((......)))))))))))))..)))..)).))))........ ( -38.10)
>DroYak_CAF1 6110 120 - 1
CAGGUAUCGCACCUUCCAGCUCGGCUUUAUCAUCUACGGCCUGAAUUCCUGUGCAGGCUUAAAUGUCUACACCAAUGUGACUUACUACAUGGACUGGAUCUUGAAUGUUCUGGAUAACUG
((((.....((...(((((...((((.((.....)).)))).....(((.(((.((((......)))).)))..(((((......)))))))))))))...)).....))))........ ( -27.00)
>consensus
CAGGUAUCGCACCUUCCAGUUCGGCAUCAUCAGCUUCGGCUUGAGUUCCUGUGCGGGCCUAAGUGUCUGCACCAAUGUGACUCACUACAUGGACUGGAUCUGGGAUGCUCUGGUUAACUC
((((((((.((...((((((((((..(((..(((....))))))...)).((((((((......))))))))..(((((......)))))))))))))..)).))))).)))........ (-33.54 = -34.54 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:38 2006