Locus 7835

Sequence ID X_DroMel_CAF1
Location 19,517,429 – 19,517,542
Length 113
Max. P 0.551578
window12847

overview

Window 7

Location 19,517,429 – 19,517,542
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 85.84
Mean single sequence MFE -37.58
Consensus MFE -26.82
Energy contribution -27.90
Covariance contribution 1.08
Combinations/Pair 1.18
Mean z-score -1.64
Structure conservation index 0.71
SVM decision value 0.04
SVM RNA-class probability 0.551578
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19517429 113 - 22224390
UGUUUGGCACCUAUCGCAUUUAGUGGGGCCGUUCGUCGACAGGUAGCCCCAGUGAUAUCGCAUAUCGGACUGCGAUAACUUUCGAUAAGCGGUCACACUGCGGACAAGCAACU
((((((...(((((((...(((.((((((..(..(....)..)..)))))).)))(((((((........))))))).....))))).((((.....)))))).))))))... ( -39.30)
>DroSec_CAF1 2188 113 - 1
UGUCCGGCAUCUAUCGCACUCAGUGGGACCGUUCGGCGACAGGUAGCCCCAGUGAUAUCGCAUAUCGGACUGCGAUAUCUUUCGAUAAGCGGUCACACUGCGGACUACCAACU
.(((((((.......))...(((((.(((((((.(((........))).....(((((((((........)))))))))........))))))).))))))))))........ ( -42.90)
>DroSim_CAF1 2189 113 - 1
UGUCCGGCAUCUAUCGCACUCAGUGGGACCGUUCGGCGACAGGUAGCCCCAGUGAUAUCGCAUAUCGGACUGCGAUAUCUUUCGAUAAGCGGUCACACUGCGGACUACCAACU
.(((((((.......))...(((((.(((((((.(((........))).....(((((((((........)))))))))........))))))).))))))))))........ ( -42.90)
>DroEre_CAF1 1651 113 - 1
UGGCUUGCACUUAUCGCACUCAAUAUGACCGUUUGGCGCCAGGUAGCCCUUGUCAUAUCGCAUAUCGGACUUCGAUAAGUUUCGAUAAGCGUUCACACUGCAGACUAGCAAAU
(((..((((.............(((((((.....(((........)))...)))))))(((.((((((((((....))).))))))).))).......))))..)))...... ( -27.40)
>DroYak_CAF1 1660 113 - 1
UGGCUUGCACAUAUCGCACGCAAUGGGACCGUUCGGCGCCAGUUAGCCCUUGUCAUAUCGCUUAUCGGGCUGCGAUAAGUUUCGAUAAGCGGUCACACUGCAGACCAUCAAAC
((((((((.......))).(((.((.((((....(((........)))...........((((((((((((......)).)))))))))))))).)).))))).)))...... ( -35.40)
>consensus
UGUCUGGCACCUAUCGCACUCAGUGGGACCGUUCGGCGACAGGUAGCCCCAGUGAUAUCGCAUAUCGGACUGCGAUAACUUUCGAUAAGCGGUCACACUGCGGACUACCAACU
.(((((((.......))...(((((.(((((((.(((........))).......(((((.((((((.....))))))....)))))))))))).))))))))))........ (-26.82 = -27.90 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:37 2006