| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,516,762 – 19,516,866 |
| Length | 104 |
| Max. P | 0.842890 |
| Location | 19,516,762 – 19,516,866 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.05 |
| Mean single sequence MFE | -45.48 |
| Consensus MFE | -31.36 |
| Energy contribution | -31.70 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19516762 104 - 22224390 UG---CCGGCUGCCGG-----GGUGGCGCCAACGCCAUCUUGGAUCCUGGCUGGGUGAUUCCCUCCAAGGUGGAGCAGCUCAUCGGCGGCGACUUUAAUCUGAGCUGCACCC .(---((((...((((-----(((((((....)))))))))))...))))).(((((.....((((.....))))((((((((((....)))........)))))))))))) ( -49.40) >DroPse_CAF1 8577 104 - 1 CGCGACCGUCUUCCAGCAAACGGUG--------GCCACCGUGGAGCCAGGCUGGCUCUAUCCCGACAAGGUCGAGCAGCUAAUCGGUGCCGACUUCAACAUCAGCUGCACCA ..((((((((.........(((((.--------...)))))((((((.....)))))).....)))..))))).((((((....((((..(....)..)))))))))).... ( -37.30) >DroSec_CAF1 1515 104 - 1 CG---CCGGCUGCCGG-----GGUGGCGCCAACGCCAUCUUGGACCCUGGCUGGGUGAUUCCCUCCAAGGUGGAGCAGCUCAUCGGCGGCGACUUUAAUCUGAGCUGCACCC .(---((((...((((-----(((((((....)))))))))))...))))).(((((.....((((.....))))((((((((((....)))........)))))))))))) ( -49.70) >DroSim_CAF1 1516 104 - 1 CG---CCGGCUGCCGG-----GGUGGCGCCAACGCCAUCUUGGACCCUGGCUGGGUGAUUCCCUCCAAGGUGGAGCAGCUCAUCGGCGGCGACUUUAAUCUGAGCUGCACCC .(---((((...((((-----(((((((....)))))))))))...))))).(((((.....((((.....))))((((((((((....)))........)))))))))))) ( -49.70) >DroYak_CAF1 993 104 - 1 CG---CCGGCUGCCGG-----GGUGGCGCUAACGCCAUCUUGGACCCUGGCUGGGUAAUUCCUUCCAAGGUGGAGCAGCUCAUCGGCGGCGACUUUAAUCUGAGCUGCACCC .(---((((...((((-----(((((((....)))))))))))...))))).((((.......(((.....)))(((((((((((....)))........)))))))))))) ( -49.20) >DroPer_CAF1 8560 104 - 1 CGCGACCGUCUUCCAGCAAGCGGUG--------GCCACCGUGGAGCCAGGCUGGCUCUAUCCCGACAAGGUCGAGCAGCUAAUCGGUGCCGACUUCAACAUCAGCUGCACCA ..((((((((.........(((((.--------...)))))((((((.....)))))).....)))..))))).((((((....((((..(....)..)))))))))).... ( -37.60) >consensus CG___CCGGCUGCCGG_____GGUGGCGCCAACGCCAUCUUGGACCCUGGCUGGGUGAUUCCCUCCAAGGUGGAGCAGCUCAUCGGCGGCGACUUUAAUCUGAGCUGCACCC .........(..((.......(((((((....)))))))....((((.....))))............))..).(((((((((((....)))........)))))))).... (-31.36 = -31.70 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:36 2006