Locus 7833

Sequence ID X_DroMel_CAF1
Location 19,515,633 – 19,515,725
Length 92
Max. P 0.922160
window12845

overview

Window 5

Location 19,515,633 – 19,515,725
Length 92
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 78.15
Mean single sequence MFE -30.17
Consensus MFE -23.59
Energy contribution -24.03
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.72
Structure conservation index 0.78
SVM decision value 1.15
SVM RNA-class probability 0.922160
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19515633 92 + 22224390
UCGUUCCGGCGAAUCUCUCCGGUGACUCGAGACAGGUUUGCCAAUGCCCCAAUA-------AUUAGCUGCCAAGCAGCU--UACGGCGCAUAUUCAUAUUC-----------
.......((((((((((((.(....)..))))..)))))))).((((.((....-------...((((((...))))))--...)).))))..........----------- ( -29.50)
>DroEre_CAF1 9019 105 + 1
CCGUUCCGGCGAAUCUCUCCGUAAACUCGAGACAGGUUUGCCAAUGCCCCACUA-------AUUAGGUGCCAAGCAGCUCGUUCGGCGCACAUUAAUAUACUGAUGCACUGC
.......(((((((((.((((......)).)).)))))))))..(((..((.((-------((((.(((((.(((.....))).)))))....)))).)).))..))).... ( -28.40)
>DroYak_CAF1 7501 108 + 1
UCGUUCCGGCGAAUCUCUCCGGUGACUGGAGACAGGUUUGCCAAUGCCCCACUAAUUACUAAUUAGGUGCCAAGCACCUCUUACGGCGCACAAUCGUACACUGAUGCA----
.......((((((((((((((....).)))))..))))))))...(((....((((.....))))(((((...)))))......)))(((((.........)).))).---- ( -32.60)
>consensus
UCGUUCCGGCGAAUCUCUCCGGUGACUCGAGACAGGUUUGCCAAUGCCCCACUA_______AUUAGGUGCCAAGCAGCUC_UACGGCGCACAUUCAUAUACUGAUGCA____
..((.(((((((((((.((((......)).)).)))))))))......................((((((...)))))).....)).))....................... (-23.59 = -24.03 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:35 2006