Locus 7832

Sequence ID X_DroMel_CAF1
Location 19,514,364 – 19,514,478
Length 114
Max. P 0.663882
window12844

overview

Window 4

Location 19,514,364 – 19,514,478
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 91.20
Mean single sequence MFE -13.87
Consensus MFE -12.64
Energy contribution -11.98
Covariance contribution -0.66
Combinations/Pair 1.18
Mean z-score -1.71
Structure conservation index 0.91
SVM decision value 0.27
SVM RNA-class probability 0.663882
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19514364 114 + 22224390
AACUGAGCGGACAUUUUAAAGUCGAAAUCUAUAAAAUCCCAAAAAUACAAAAUUUUUGUAGAUAACACAAUAACUAAUCGACUCUUUUUUUUCCUUCGCUUGUAUUUAAUAAUA
....(((((((........((((((.((((((((((.................))))))))))..............))))))...........)))))))............. ( -16.50)
>DroSec_CAF1 7483 112 + 1
AACCGAGCAGAUAUUUCAAAGUCCAAAUCUAUAAAAUCCCAAACAUACAAAAUAUUUGUAGAUAACACAAUAACUAAUCGACUCUUU--UUUCCCUCGCUUGAAUUUAAUAAAA
...(((((.((....)).........(((((((((...................)))))))))........................--........)))))............ ( -11.51)
>DroSim_CAF1 6330 113 + 1
AACCGAGCAGAUAUUUCAAAGUCCAAAUCUAUAAAAUCCCAAACAUACAAAAUAUUUGUAGAUAACACAAUAACUAAUCGACACUUUU-UUUCCCUCGCUCGAAUUUGAUAAAA
...(((((.((....)).........(((((((((...................))))))))).........................-........)))))............ ( -13.61)
>consensus
AACCGAGCAGAUAUUUCAAAGUCCAAAUCUAUAAAAUCCCAAACAUACAAAAUAUUUGUAGAUAACACAAUAACUAAUCGACUCUUUU_UUUCCCUCGCUUGAAUUUAAUAAAA
...(((((.(((........)))...(((((((((...................)))))))))..................................)))))............ (-12.64 = -11.98 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:34 2006