Locus 7831

Sequence ID X_DroMel_CAF1
Location 19,509,197 – 19,509,317
Length 120
Max. P 0.949114
window12843

overview

Window 3

Location 19,509,197 – 19,509,317
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.50
Mean single sequence MFE -48.58
Consensus MFE -39.42
Energy contribution -41.38
Covariance contribution 1.96
Combinations/Pair 1.10
Mean z-score -2.00
Structure conservation index 0.81
SVM decision value 1.39
SVM RNA-class probability 0.949114
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19509197 120 - 22224390
AACGGACUCGUACAACGGCACCGUGGUGCACGUGGAUGCAAAUCCAGCCAACGAGUGGGAACGAAGGUAUGAGUGCCUUCUGGAUGGCGUCAUCCAGAGUCAUGUGUGCGUCCGAGUCUA
...((((((.....(((((((....)))).)))(((((((..(((.((......)).)))..(((((((....)))))((((((((....)))))))).)).....))))))))))))). ( -49.30)
>DroSec_CAF1 2356 120 - 1
AACGGACUCGUACAACGGCACCGUGGUGCACAUGGAUGCGAAUCCCGCCAACGAGUGGGAGCGAAGGUAUGAGUGCCUUCUGGAUGGCGUCAGCCAGAGCCAUGUGUCCGUCCGAGUCUA
...(((((((.((....((((....))))....(((((((..((((((......))))))..(((((((....)))))))(((.((((....))))...)))))))))))).))))))). ( -54.90)
>DroSim_CAF1 4021 120 - 1
AACGGACUCCUACAACGGCACCGUGGUGCACAUGGAUGCGAAUCCCGCCAACGAGUGGGAGCGAAUGUAUGAGUGCCUUCUGGAUGGCGUCAGCCAGAGCCAUGUGUCCGUCCGAGUCUA
...((((((.....(((((((...((..(.((((.((.((..((((((......)))))).)).)).)))).)..))...(((.((((....))))...))).))).))))..)))))). ( -47.10)
>DroEre_CAF1 2729 120 - 1
GACGGACUCGUACAACGGCACCGUGAUACACAGGGAUGCGAAUCCCGACAACGAAUGGGAGCGAAGGUAUGAGUGCCUUCUGGAUGGCAUGAGCCAGGUCCAUGUGUGCGUCCGAGUGUA
..(((((.((((((...((.((((........(((((....)))))........))))..))(((((((....)))))))((((((((....))))..)))))))))).)))))...... ( -45.29)
>DroYak_CAF1 1667 120 - 1
GACGGUCUCGUACAACGGCACCGUGACGCACAGGGAUGCGAAUCCCGCCAACGAAUGGGAGCGCAGGUAUGAGUGCCUUCUGGAUGGCGUGAGCCAGGUCUAUGUGUCCGUCCGAGUGUA
(((((.(.((((...((((((((((.(((...(((((....))))).(((.....)))..)))....)))).))))).......((((....)))))...)))).).)))))........ ( -46.30)
>consensus
AACGGACUCGUACAACGGCACCGUGGUGCACAUGGAUGCGAAUCCCGCCAACGAGUGGGAGCGAAGGUAUGAGUGCCUUCUGGAUGGCGUCAGCCAGAGCCAUGUGUCCGUCCGAGUCUA
..(((((..((((.(((....))).))))....(((((((..((((((......))))))..(((((((....)))))))(((.((((....))))...)))))))))))))))...... (-39.42 = -41.38 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:33 2006