Locus 7829

Sequence ID X_DroMel_CAF1
Location 19,499,233 – 19,499,330
Length 97
Max. P 0.690851
window12841

overview

Window 1

Location 19,499,233 – 19,499,330
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 89.25
Mean single sequence MFE -36.53
Consensus MFE -31.34
Energy contribution -32.15
Covariance contribution 0.81
Combinations/Pair 1.13
Mean z-score -1.68
Structure conservation index 0.86
SVM decision value 0.33
SVM RNA-class probability 0.690851
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19499233 97 + 22224390
CAGGAGUUCGAGGAGCGCCGCAAGCGGGUCAUCCUGCACUCGGUGCUCUUCUACUGACGACCGACGUCUGCUAACAGUUCGUGUCCAGCUCCAGCAC-
..((((((.(((((((((((...(((((....)))))...))))))))))).......((((((...(((....))).))).))).)))))).....- ( -43.30)
>DroSec_CAF1 4998 97 + 1
CAGGAGUUCGAGGAGCGCCGCAAGCGAGUCAUCCUGCACUCGGUGCUCUUCUACUGACGACCGACGUCUGCCAACAGUUCGUGUCCAGCUCCAGCAC-
..((((((.(((((((((((...(((........)))...))))))))))).......((((((...(((....))).))).))).)))))).....- ( -36.90)
>DroSim_CAF1 4521 97 + 1
CAGGAGUUCGAGGAGCGCCGCAAGCGAGUCAUCCUGCACUCGGUGCUCUUCUACUGACGACCGACGUCUGCCAACAGUUCGGGUCCAGCUCCAGCAC-
..((((((.(((((((((((...(((........)))...)))))))))))....(((..((((...(((....))).))))))).)))))).....- ( -37.60)
>DroEre_CAF1 2428 97 + 1
CAGGAGUUCGAGGAGCGCCGCAACCGGGUAAUCCUGCACUCAGUGCUCUUCUACUGACGACCGACGUCUGCCAGCAGCUCGUGUCCAUCUCCAGCAC-
..((((...(((((((((.(....((((....))))....).))))))))).......((((((.(.(((....))))))).)))...)))).....- ( -33.10)
>DroYak_CAF1 4497 97 + 1
CAGGAGUUCGAGGAGCGCCGCAACCGGGUCAUCCUGCACUCGGUGCUCUUCUACUGACGACCGACGUCUGCCAACAGCUCGUGUCCAGCUCCAGCAC-
..((((((.(((((((((((....((((....))))....))))))))))).......((((((.(.(((....))))))).))).)))))).....- ( -40.20)
>DroAna_CAF1 4968 98 + 1
CAGGAAUUCGAAGAGCGGCGAAAUCGGGUGAUCCUGCACUCCGUUCUCUUUUACUGACGACCGUCGCGUGGCAUCGGAACGUGUCCAGCUCCUGUUUU
(((((....((.((((((.(....((((....))))..).)))))))).......(((....)))((.((((((......))).)))))))))).... ( -28.10)
>consensus
CAGGAGUUCGAGGAGCGCCGCAAGCGGGUCAUCCUGCACUCGGUGCUCUUCUACUGACGACCGACGUCUGCCAACAGUUCGUGUCCAGCUCCAGCAC_
..((((((.(((((((((((....((((....))))....))))))))))).......((((((...(((....))).))).))).))))))...... (-31.34 = -32.15 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:31 2006