Locus 7828

Sequence ID X_DroMel_CAF1
Location 19,497,024 – 19,497,128
Length 104
Max. P 0.999957
window12840

overview

Window 0

Location 19,497,024 – 19,497,128
Length 104
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -32.78
Consensus MFE -31.52
Energy contribution -31.52
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.77
Structure conservation index 0.96
SVM decision value 4.86
SVM RNA-class probability 0.999957
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19497024 104 + 22224390
CACCCACUCAUGCACACGCUGCUCACACGGACAGGUGAGCAGUGGAACGAGCCAAUUCCAAUAUCAAUUCCAGCUCCAAACGCCGCUUUGCACAGUGGAA-CA-UC
...(((((..((((..((((((((((.(.....)))))))))))....((((.((((........))))...))))............)))).)))))..-..-.. ( -31.80)
>DroSec_CAF1 2759 105 + 1
CACCCACUCAUGCACACGCUGCUCACACGGACAGGUGAGCAGUGGAACGAGCCAAUUGCAAUAUCAAUUCCAGCUCCAAACGCCGCUUGGCACAGUGGAAUCA-UC
...(((((..(((...((((((((((.(.....)))))))))))...(((((.(((((......)))))...((.......)).)))))))).))))).....-.. ( -34.60)
>DroSim_CAF1 2308 105 + 1
CACCCACUCAUGCACACGCUGCUCACACGGACAGGUGAGCAGUGGAACGAGCCAAUUCCAAUAUCAAUUCCAGCUCCAAACGCCGCUUGGCACAGUGGAAUCA-UC
...(((((..(((...((((((((((.(.....)))))))))))...(((((.((((........))))...((.......)).)))))))).))))).....-.. ( -31.90)
>DroEre_CAF1 282 106 + 1
CACCCACUCAUGCACACGCUGCUCACACGGACAGGUGAGCAGUGGAACGAGCCAAUUCCAAUAUCAAUUCCAGCUCGAAACGCCGCUUCGCACAGUGGAGCCAAUU
...(((((..(((...((((((((((.(.....)))))))))))...(((((.((((........))))...)))))............))).)))))........ ( -34.40)
>DroYak_CAF1 2625 105 + 1
CACCCACUCAUGCACACGCUGCUCACACGGACAGGUGAGCAGUGGAACGAGCCAAUUCCAAUAUCAAUUCCAGCUCCAAACGCCGCUUGGCACAGUGGCACCA-UU
...(((((..(((...((((((((((.(.....)))))))))))...(((((.((((........))))...((.......)).)))))))).))))).....-.. ( -31.20)
>consensus
CACCCACUCAUGCACACGCUGCUCACACGGACAGGUGAGCAGUGGAACGAGCCAAUUCCAAUAUCAAUUCCAGCUCCAAACGCCGCUUGGCACAGUGGAACCA_UC
...(((((..(((...((((((((((.(.....)))))))))))....((((.((((........))))...)))).............))).)))))........ (-31.52 = -31.52 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:30 2006