Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,489,825 – 19,489,932 |
Length | 107 |
Max. P | 0.661421 |
Location | 19,489,825 – 19,489,932 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 77.63 |
Mean single sequence MFE | -39.10 |
Consensus MFE | -24.77 |
Energy contribution | -25.36 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.29 |
Mean z-score | -1.41 |
Structure conservation index | 0.63 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661421 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19489825 107 + 22224390 UUCAGCUGCCAGCUGGUCAAACAGAACGCCAGCGGCCAAUUGGGCGGCAUCUUUCAGAGUUCUGCCGUCAGUGCCCACUGGGCAACGCAAUGCGA---GUCCCCUCCAAA ....((.(((.((((((..........)))))))))..(((((((((((.(((...)))...)))))))..(((((...)))))...))))))((---(....))).... ( -35.80) >DroVir_CAF1 3451 99 + 1 UUUAGCUGCCAGCUGGCCAAGCAGAACGCCAACGGCCAGCUGGGCAACAUCUUUCAGAGCUCCGCCCUGAGCGCCCAUUGGGCCACACGCUAUGCC-----------AAC ..((((((((((((((((..((.....))....)))))))).))))............((((......))))((((...)))).....))))....-----------... ( -37.70) >DroEre_CAF1 3451 107 + 1 UUCAGCUGCCAGCUAGUCAAACAGAACGCCAGCGGCCAGUUGGGCGGCAUCUUUCAGAGUUCCGCCGUCAGUGCCCACUGGGCAACGCACUGCGA---GUCGCCUCCAAA ..((((((((.(((.((..........)).))))).))))))((((((.((.....))....(((.(((..(((((...)))))..).)).))).---))))))...... ( -36.40) >DroYak_CAF1 3441 107 + 1 UUCAGCUGCCAGCUGGUCAAACAGAACGCCAGCGGUCAGCUGGGCGGCAUCUUUCAGAGUUCCGCCGUCAGUGCCCACUGGGCAACACACUGCCA---GUCGCCGCCAAA ..((((((((.((((((..........)))))))).))))))((((((..((..(((.((...(((..((((....)))))))...)).)))..)---)..))))))... ( -48.60) >DroMoj_CAF1 3503 99 + 1 UUCAGCUGUCAGCUGGCCAAGCAGCACGCCACCGGUCAGAUGGCCGACAUCUUUCAGAGCUCCGCUCUGAGCGCCCACUGGGCGACGCGCUACCCC-----------AAC ...(((((((.((((......))))..((...(((((....))))).......(((((((...)))))))))((((...)))))))).))).....-----------... ( -37.50) >DroAna_CAF1 3321 110 + 1 UUUAGCUGUCAGCUCGUCAAGCAGAACGCCAGCGGCGAGGUGGGCGGCAUCUUCCAGAGCUCGGCCCUCAGCGCCCACUGGGCUACGCGUUACGACGACUUGGCUUCCGG .......(((((.(((((......(((((..(..((..((((((((((.((.....)))))..((.....)))))))))..))..))))))..))))).)))))...... ( -38.60) >consensus UUCAGCUGCCAGCUGGUCAAACAGAACGCCAGCGGCCAGCUGGGCGGCAUCUUUCAGAGCUCCGCCCUCAGCGCCCACUGGGCAACGCACUACGA___GUCGCCUCCAAA ....((((.(((((((((...............)))))))))(((((..((.....))...)))))..))))((((...))))........................... (-24.77 = -25.36 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:29 2006