Locus 7826

Sequence ID X_DroMel_CAF1
Location 19,486,056 – 19,486,172
Length 116
Max. P 0.796891
window12838

overview

Window 8

Location 19,486,056 – 19,486,172
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.34
Mean single sequence MFE -26.16
Consensus MFE -12.68
Energy contribution -13.80
Covariance contribution 1.12
Combinations/Pair 1.29
Mean z-score -2.16
Structure conservation index 0.48
SVM decision value 0.60
SVM RNA-class probability 0.796891
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19486056 116 + 22224390
AUUGGCUUGCCUCUCAGUUACAAACUUGUUUAAGCAUGUAUAUAGAAAAAAUUGAAAAUGUACAGAAAUAUAU---GGUAAC-UAGUAACUCAAGUCCUUGCCAUCGCUAAAUUUGCGAA
...((((((...((.((((((.....(((((.....(((((((..............))))))).)))))...---.)))))-))).....)))))).......((((.......)))). ( -22.44)
>DroSec_CAF1 8038 116 + 1
AGUGGCUUGGAUCCCAGUUACAAACUUGUUUAAGCAUGUAUAUCUAAAAAAUUGAAAAUGCACUGAAAUAUAU---GGUAAC-UAGUAACUCAAGUCCUUGCCAUCGCUACAUUUGCGAA
..((((..((((...((((((...(((....)))(((((((.((....................)).))))))---).....-..))))))...))))..))))((((.......)))). ( -27.55)
>DroSim_CAF1 8972 116 + 1
AGUGGCUUGGGUCCCAGUUACAAACUUGCUUAAGCAUGUAUGCAUAAAAAAUUGAAAAUGCACUGAAAUAUAU---GGUAAC-UAGUAACUCAAGCCCUUGCCAUCGCUACAUUUGCGAA
((.(((((((((..(((((((..((.(((....))).)).(((((............)))))...........---.)))))-).)..))))))))))).....((((.......)))). ( -33.40)
>DroEre_CAF1 7697 113 + 1
AUUGGCUUGCAUCUCAGUUACAAACUUGUUUAACCAAGUUUGUGGAAAAAAAU-------UAAAGAAAUAUAAACUUAAAACUUAAAGACUUAAGUCUUUGCCAUCUCUAGAUUUGCGAA
......(((((..((..(((((((((((......)))))))))))........-------.......................(((((((....))))))).........))..))))). ( -23.70)
>DroYak_CAF1 7259 115 + 1
AUUGGCUGGGUUCUCAGUUACAAACAUGUUUAACGAA-UUCGUAGAAAAUAUUUGAAAUUUACUGAAAUAUGA---UAUAAC-UAAAGACUCGAGUCUUUGCCAUCGCUAAAUUUGCGAA
..((((.......(((((..((((.((.(((.(((..-..))).))).)).))))......))))).......---......-.((((((....))))))))))((((.......)))). ( -23.70)
>consensus
AUUGGCUUGGAUCUCAGUUACAAACUUGUUUAAGCAUGUAUGUAGAAAAAAUUGAAAAUGUACUGAAAUAUAU___GGUAAC_UAGUAACUCAAGUCCUUGCCAUCGCUAAAUUUGCGAA
..((((..((((...((((((..((.(((....))).))(((((........................)))))............))))))...))))..))))((((.......)))). (-12.68 = -13.80 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:28 2006