Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,484,245 – 19,484,365 |
Length | 120 |
Max. P | 0.839395 |
Location | 19,484,245 – 19,484,365 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.17 |
Mean single sequence MFE | -48.04 |
Consensus MFE | -43.50 |
Energy contribution | -44.10 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.05 |
Mean z-score | -1.34 |
Structure conservation index | 0.91 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.839395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19484245 120 + 22224390 ACUUGCAGCAACUUCUUAAGGAAGUUGAGGUGCUGCUCGACGGCCAGUGUGGAACUUGUGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAGCGCAGCGGCUCCUCGUUGAACAGCUGA .....((((((((((.....))))))((((.((((((((.((((((((.....)).)).)))(((((((.....)))))))...........))).)))))).))))........)))). ( -47.60) >DroSec_CAF1 6230 120 + 1 ACUUGCAGCAACUUUUUGAGGAAGUUGUGAUGCUGCUCGACGGCCAGCGUGGAACUUGGGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAGCGCAGCGGCUCCUCGUUGAACAGCUGG .....((((...((..((((((.(((((..((((((((.((((((...(.....)...))))(((((((.....)))))))..)).)).))))))..)))))))))))..))...)))). ( -48.40) >DroSim_CAF1 7180 120 + 1 ACUUGCAGCAACUUUUUGAGGAAGUUGUGGUGCUGCUCGACGGCCAGCGUGGAACUUGGGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAGCGCAGCGGCUCCUCGUUGAACAGCUGG .....((((...((..((((((.(((((.(((((((((.((((((...(.....)...))))(((((((.....)))))))..)).)).))))))).)))))))))))..))...)))). ( -51.30) >DroEre_CAF1 5911 120 + 1 ACCUGCAGCAGCUUCUUGAGGAAGUUGUGGUGCUGCUCGACGGUCAGCGUGGAACUUGUGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAUCGCAGCGGCUCCUCGUUGAACAGCUGA ....((.((((((((.....)))))))).))((((.(((((((((.((((((.((.(.(..((((((((.....))))))).)..).).)).)))).)))))....)))))).))))... ( -46.20) >DroYak_CAF1 5466 120 + 1 ACCUGCAGCAGCUUCUUGAGGAAAUUGUGGUGCUGCUCGACGGCCAGCGUGGAACUUGUGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAGCGCAGCGGCUCCUCGUUGAACAGCUGG ........(((((((.((((((..((((.(((((((((....(((((((..(...)..))).(((((((.....))))))))))).)).))))))).)))).))))))..))..))))). ( -46.70) >consensus ACUUGCAGCAACUUCUUGAGGAAGUUGUGGUGCUGCUCGACGGCCAGCGUGGAACUUGUGUCGGCCGGUAUCUGACUGGCCUGGUAGAUGUAGCGCAGCGGCUCCUCGUUGAACAGCUGG .....((((...(((.((((((.(((((.(((((((((.((((((((........))).)))(((((((.....)))))))..)).)).))))))).)))))))))))..)))..)))). (-43.50 = -44.10 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:23 2006