Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,483,254 – 19,483,373 |
Length | 119 |
Max. P | 0.911949 |
Location | 19,483,254 – 19,483,373 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.13 |
Mean single sequence MFE | -47.90 |
Consensus MFE | -39.76 |
Energy contribution | -39.96 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.72 |
Structure conservation index | 0.83 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19483254 119 + 22224390 ACGGCACAGCUGAUGCUUACCGGGCUC-CUUGAGCAACAGCUCCACGUGGCCGUUGAUCUGCUCGAAAACGGGAAGCAGCAGCAGCGGAUACUUGUGGGCCAGCUUCACCAGCAGCGAGG ..(((..(((((.((((((..((....-)))))))).)))))(((((.(.((((((..((((((........).)))))...))))))...).)))))))).(((.(....).))).... ( -44.80) >DroSec_CAF1 5238 120 + 1 ACGGCACAGCUGAUGCUGACCGGGCUCCCUUGAGCAAAAGCUCCACGUGGCCGUUGAUCUGCUCGAAAACGGGCAGCAGUAGCAGCGGGUACUUGUGGGCCAGCUUCACCAGCAGCGAGG .((((...)))).(((((.(.((((((....))))..((((((((((((.((((((.((((((((....))))))).)....)))))).)))..))))...)))))..)).))))))... ( -47.40) >DroSim_CAF1 5301 119 + 1 ACGGCACAGCUGAUGCUGACCGGGCUC-CUUGAGCAAAAGCUCCACGUGGCCGUUGAUCUGCUCGAAAACGGGCAGCAGUAGCAGCGGGUACUUGUGGGCCAGCUUCACCANNNNNNNNN .(((..((((....)))).)))(((((-...((((....))))((.(((.((((((.((((((((....))))))).)....)))))).))).)).)))))................... ( -45.10) >DroEre_CAF1 4920 119 + 1 ACGGCACAGCUGAUGCUGACCAGGCUC-CUUGAGCAAGAGCUCUACGUGCCCGUUGAUCUGCUCGAAAACGGGCAGCAGCAGCAGCGGGUACUUGUGAGCCAGCUUCACCAGCAGCGAGG ...((.((((....))))....(((((-...((((....))))...((((((((((.((((((((....))))))).)....))))))))))....))))).(((.....))).)).... ( -51.10) >DroYak_CAF1 4475 119 + 1 ACGGCACAGCUGAUGCUGACCGGGCUC-CUUGAGCAAGAGCUCCACGUGCCCGUUGAUCUGCUCGAAAACGGGCAGCAGCAACAGCGGGUACUUGUGAGCCAACUUCACCAGCAGCGAGG .(((..((((....)))).)))(((((-...((((....))))((.((((((((((.((((((((....))))))).)....)))))))))).)).)))))..((((.(.....).)))) ( -51.10) >consensus ACGGCACAGCUGAUGCUGACCGGGCUC_CUUGAGCAAAAGCUCCACGUGGCCGUUGAUCUGCUCGAAAACGGGCAGCAGCAGCAGCGGGUACUUGUGGGCCAGCUUCACCAGCAGCGAGG .(((..((((....)))).)))(((((....((((....))))((.(((.((((((.((((((((....))))))).)....)))))).))).)).)))))................... (-39.76 = -39.96 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:18 2006