Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,176,657 – 2,176,758 |
Length | 101 |
Max. P | 0.902056 |
Location | 2,176,657 – 2,176,758 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 86.50 |
Mean single sequence MFE | -30.45 |
Consensus MFE | -20.86 |
Energy contribution | -20.68 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.30 |
Mean z-score | -2.55 |
Structure conservation index | 0.69 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2176657 101 + 22224390 UUCUGAGCGCCAGCAUUGUGUUUCGAA----AAAUCCCUAGGGAUUUUUCGAAACACCCUUGAACAUUUGCCAUGCAAAACA---GUGCGCUUUCAUAGAAUCGUGUC (((((((((((..((..((((((((((----((((((....))))))))))))))))...))....(((((...)))))...---).))))))....))))....... ( -36.80) >DroSec_CAF1 48515 98 + 1 UUCUGGGCGUCAGCAUUGUGUUUUGA------AGUCCCUAGGGGUUUUU-GAAACACCCUUCAACAUUUGCCAUGCAAAACA---GCGCGCUUUCACAGAAUCGUGUC ((((((((((..((...((((((..(------((.(((...))).))).-.)))))).........(((((...)))))...---)))))))....)))))....... ( -26.80) >DroSim_CAF1 46188 98 + 1 UUCUGGGCGUCAGCAUUGUGUUUCGA------AAUCCCUAGGGGUUUUU-GAAACACCCUUCAACAUUUGCCAUGCAAAACA---GCGCGCUUUCACAGAAUCGUGUC ((((((((((..((...(((((((((------((.(((...))).))))-))))))).........(((((...)))))...---)))))))....)))))....... ( -29.40) >DroEre_CAF1 49752 107 + 1 UUCUCGGCGCCAGCAUUGUGUUUCGAAACACGAAUCCCUAGGGGUUUUC-GAAACACCCUUGAAUAUUUGCCAUGCAAAACAGUGACUCGCUUUCAUGGAAUCCUGUU .....((((....((..(((((((((.....((((((....))))))))-)))))))...))......))))......(((((.((.((.(......))).))))))) ( -28.80) >consensus UUCUGGGCGCCAGCAUUGUGUUUCGA______AAUCCCUAGGGGUUUUU_GAAACACCCUUCAACAUUUGCCAUGCAAAACA___GCGCGCUUUCACAGAAUCGUGUC ((((((((((..((...(((((((.......((((((....))))))...))))))).........(((((...)))))......)))))))....)))))....... (-20.86 = -20.68 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:42 2006