Locus 7818

Sequence ID X_DroMel_CAF1
Location 19,482,298 – 19,482,418
Length 120
Max. P 0.744268
window12823

overview

Window 3

Location 19,482,298 – 19,482,418
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.00
Mean single sequence MFE -48.24
Consensus MFE -41.90
Energy contribution -43.26
Covariance contribution 1.36
Combinations/Pair 1.12
Mean z-score -1.34
Structure conservation index 0.87
SVM decision value 0.46
SVM RNA-class probability 0.744268
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19482298 120 + 22224390
GUGCGAUUGAGCUGAUCCUCCAGCACCUCCUGCGUAUCGUUUACCUCGCCGUCCAGCUGGCCGCUUUCGUAGAGCGAGGCGAUGUAGAUCCAGCGGCGCGUGAGGCGUUCGCACAUCAAU
((((((.((.((((......)))).((((.(((((...((((((.((((((((.....)))(((((.....))))).))))).))))))......))))).)))))).))))))...... ( -49.70)
>DroSec_CAF1 4281 120 + 1
GUGCGAUUGAGCUGAUCCUCCAGCACCUCCUGCGUGUCGUUCACCUCGCCGUCGAGCUGACCGCUUUCGUAGAGCGAGGCGAUGUAGAUCCAGCGGCGCGUGAGACGCUCGCACAUCAGU
((((((.((.((((......))))..(((..(((((((((((((.((((((((.....)))(((((.....))))).))))).)).))....)))))))))))).)).))))))...... ( -49.60)
>DroSim_CAF1 4345 120 + 1
GUGCGAUUGAGCUGAUCCUCCAGCACCUCCUGCGUGUCGUUCACCUCGCCGUCGAGCUGGCCGCUUUCGUAGAGCGAGGCGAUGUAGAUCCAGCGGCGCGUGAGACGCUCGCACAUCAGU
((((((.((.((((......))))..(((..(((((((((((((.((((((((.....)))(((((.....))))).))))).)).))....)))))))))))).)).))))))...... ( -49.00)
>DroEre_CAF1 3964 120 + 1
GUGCGGUUGAGCUGAUCCUCCAGAACCUCCUGUGUGUCGUUUACCUCGCCGUUUAGCUGUCCGCUCUCGUACAGCGAGGCGAUGUAGAUCCAGCGGCGCGUGAGGCGUUCGCACAUCAAC
(((((..((..(((......)))..((((...((((((((((((.(((((.....(((((.((....)).)))))..))))).))).....))))))))).))))))..)))))...... ( -44.90)
>DroYak_CAF1 3519 120 + 1
GUGCGGUUGAGCUGAUCCUCCAGAACCUCCUGCGUGUCGUUUACCUCGCCGUUCAGCUGUCCGCUCUCGUAGAGCGAGGCGAUGUAGAUCCAGCGGCGCGUUAGGCGUUCGCACAUCAAU
((((((..((.....))..)).((((..((((((((((((((((.((((((.....)....(((((.....))))).))))).))).....))))))))).)))).))))))))...... ( -48.00)
>consensus
GUGCGAUUGAGCUGAUCCUCCAGCACCUCCUGCGUGUCGUUUACCUCGCCGUCCAGCUGGCCGCUUUCGUAGAGCGAGGCGAUGUAGAUCCAGCGGCGCGUGAGGCGUUCGCACAUCAAU
((((((.((.((((......)))).((((..(((((((((((((.((((((((.....)))(((((.....))))).))))).))).....)))))))))))))))).))))))...... (-41.90 = -43.26 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:14 2006