Locus 7817

Sequence ID X_DroMel_CAF1
Location 19,481,978 – 19,482,098
Length 120
Max. P 0.884461
window12822

overview

Window 2

Location 19,481,978 – 19,482,098
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.75
Mean single sequence MFE -42.62
Consensus MFE -38.16
Energy contribution -38.08
Covariance contribution -0.08
Combinations/Pair 1.09
Mean z-score -1.42
Structure conservation index 0.90
SVM decision value 0.93
SVM RNA-class probability 0.884461
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19481978 120 + 22224390
AACGCAUCACGGGCGCUGCGAUGUUGACAGCCUUCAUGCUGCACAUGCCGUCGUUCCAGGCGAUGGCUUUUAGCAAGGUCAUGAGCACAUAAUUGCCAAUGAGUCCGUUGCGCAGCAGCU
...((.....(((.((((((....)).)))).))).((((((....((((((((.....)))))))).....((((((((((..(((......)))..))))..)).)))))))))))). ( -44.10)
>DroSec_CAF1 3961 120 + 1
AACGCAUCACGGGCGCUGCGAUGUUGACAGCCUUCAUGCUGCACAUGCCGUCGUUCCAGGCGAUGGCCUUCAACAAAGUCAUGAGGACGUAAUUGCCAAUGAGUCCGUUGCGCAGCAGCU
...((.......))(((((..((((((((((......)))).....((((((((.....))))))))..))))))..(((.....))).....((((((((....))))).)))))))). ( -42.20)
>DroSim_CAF1 4025 120 + 1
AACGCAUCACGGGCGCUGCGAUGUUGACAGCCUUCAUGCUGCACAUGCCGUCGUUCCAGGCGAUGGCCUUCAGCAAAGUCAUGAGGACGUAAUUGCCAAUGAGUCCGUUGCGCAGCAGCU
..((((..((((((((((..((((.(.((((......)))))))))((((((((.....))))))))...))))....((((..((.((....)))).))))))))))))))........ ( -43.30)
>DroEre_CAF1 3644 120 + 1
AUCGCAUCACUGGCGCUGCAAUGUUGACAGCCUUCAUGCUGCACAUGCCGUCGUUCCAGGCGAUGGCCUUCAGCAAGGUCAUGAGCACGUAAUUUCCAAUGAGUCCGUUGCGCAGCAGCU
...........((((((((..((((.(..((((...(((((.....((((((((.....))))))))...)))))))))..).)))).........(((((....))))).))))).))) ( -40.30)
>DroYak_CAF1 3199 120 + 1
AUCGCAUCACAGGCGCCGCAAUGUUGACAGCCUUCAUGCUGCACAUGCCGUCGUUCCAGGCGAUGGCCUUCAGCAAGGUCAUUAGCACGUAAUUGCCAAUGAGUCCAUUGCGCAGCAGCU
...((.....((((....((....))...))))...((((((....((((((((.....)))))))).....(((((((((((.(((......))).)))))..)).)))))))))))). ( -43.20)
>consensus
AACGCAUCACGGGCGCUGCGAUGUUGACAGCCUUCAUGCUGCACAUGCCGUCGUUCCAGGCGAUGGCCUUCAGCAAGGUCAUGAGCACGUAAUUGCCAAUGAGUCCGUUGCGCAGCAGCU
...((.......))(((((..((((((((((......)))).....((((((((.....))))))))..))))))..................((((((((....))))).)))))))). (-38.16 = -38.08 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:13 2006