Locus 7814

Sequence ID X_DroMel_CAF1
Location 19,480,624 – 19,480,743
Length 119
Max. P 0.583628
window12818

overview

Window 8

Location 19,480,624 – 19,480,743
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.60
Mean single sequence MFE -27.13
Consensus MFE -19.73
Energy contribution -20.73
Covariance contribution 1.00
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.73
SVM decision value 0.10
SVM RNA-class probability 0.583628
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19480624 119 + 22224390
CUGGUGUGUUUUUGGGCUAUAAUUAUUAUACUGCAUAAUGCAUGAUGCAUUCGCGGUGCGGGAUGUGUGAUCAUAUACAAUUUGAUGUAUUAUAUAAUAAUAACUU-UUGCCUAUCAACU
.......(((..(((((.....(((((((.(((((((((((.....)))))....))))))..((((((((.((((........)))))))))))))))))))...-..)))))..))). ( -28.50)
>DroSec_CAF1 2656 119 + 1
CUGGUGUGUUUUUGGGCUAUAAUUAUUUUACUGCAUAAUGCAUGAUGCAUUCGCGACGCGGGAUGUGUGAUCAUAUACAACUUGAUGUAUUAUAUAAUAAUAACUU-UUGCCUAUCAACU
.......(((..(((((.....(((((....((.(((((((((..(((....)))...((((.((((((....)))))).))))))))))))).))..)))))...-..)))))..))). ( -24.20)
>DroEre_CAF1 2291 108 + 1
CCGGU--GUUUUUGGGUUAUUAUUA---U-------AAUGCAUAAUGCAUUCGCGGUGCGGGAUGUGUGUUCAUAUACAGUUUGAUGUAUUAUAUAAUAAUAACUUUUUGCCUAUCAACU
..(((--(.....((((((((((((---(-------(((((((..(((((.....)))))..))))))......(((((......)))))..))))))))))))))..))))........ ( -27.60)
>DroYak_CAF1 1821 120 + 1
CCGGUGUGUUUUUGGGUUAUAAUUAUUAUAAUGCCAAAUGCAUAAUGCAUUCGCGGUGCGGGAUGUGUGUUCAUAUACAGAUUGAUGUAUUAUAUAAUAAUAACUUUUUGCCUAUCAACU
..((((.((....(((((((.(((((.(((((((....(((((...((....)).))))).(((.(((((....))))).)))...)))))))))))).)))))))...)).)))).... ( -28.20)
>consensus
CCGGUGUGUUUUUGGGCUAUAAUUAUUAUACUGCAUAAUGCAUAAUGCAUUCGCGGUGCGGGAUGUGUGAUCAUAUACAAUUUGAUGUAUUAUAUAAUAAUAACUU_UUGCCUAUCAACU
.......(((..(((((.....(((((((...((.....))(((((((((((((...)))...((((((....))))))....))))))))))...)))))))......)))))..))). (-19.73 = -20.73 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:09 2006