| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,472,163 – 19,472,283 |
| Length | 120 |
| Max. P | 0.819671 |
| Location | 19,472,163 – 19,472,283 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -31.57 |
| Consensus MFE | -30.12 |
| Energy contribution | -29.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.819671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19472163 120 - 22224390 CGAGUACCUCGGAAUCGAAAAGAAAAAAACAUAAGCAGACAGGCGAAACAGAGCAUUCCGUUCAAUAAUGAAUGCAUAAGAACGUUCGACGCGCGCCGAGAACCAGUCUGCAUACGAGUC .......((((...((.....))...........((((((.((((.....((((.(((((((((....)))))).....))).))))......))))(.....).))))))...)))).. ( -30.60) >DroSim_CAF1 1492 120 - 1 CGAGUACCUCGGAAUCGAAAAGAAAAAAACAUAAGCAGACAGGCGAAACAGAGCAUUCCGUUCAAUAAUGAAUGCAUAAGAACGUUCGACGCGCGCCGAGAAUCAGUCUGCGUACGAGUC ...((((.(((....)))................((((((.((((.....((((.(((((((((....)))))).....))).))))......))))(.....).))))))))))..... ( -31.50) >DroYak_CAF1 1487 120 - 1 CGAGUACCUCGGAAUCGAAAAGAAAAAAACAUAAGCAGACAGGCGAAACAGAGCAUUCCGUUCAAUAAUGAAUGCAUAAGAACGUUCGACGCGCGCCGUGAACCAGUCUGCGUAUGAGUC ((((...))))..................((((.((((((.((((.....((((.(((((((((....)))))).....))).))))......))))(....)..)))))).)))).... ( -32.60) >consensus CGAGUACCUCGGAAUCGAAAAGAAAAAAACAUAAGCAGACAGGCGAAACAGAGCAUUCCGUUCAAUAAUGAAUGCAUAAGAACGUUCGACGCGCGCCGAGAACCAGUCUGCGUACGAGUC .......((((...((.....))...........((((((.((((.....((((.(((((((((....)))))).....))).))))......))))(.....).))))))...)))).. (-30.12 = -29.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:05 2006