Locus 7811

Sequence ID X_DroMel_CAF1
Location 19,471,588 – 19,471,702
Length 114
Max. P 0.761966
window12813

overview

Window 3

Location 19,471,588 – 19,471,702
Length 114
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 90.40
Mean single sequence MFE -26.68
Consensus MFE -21.83
Energy contribution -21.83
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.36
Structure conservation index 0.82
SVM decision value 0.50
SVM RNA-class probability 0.761966
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19471588 114 - 22224390
AUGAGCAUGCCAAUGCCAGCAAAGGCAAAGGCAA------ACGAAAUAGCAAAUCCAAAUCGCAAUCGCGAAUUGUGCACGCAAAUCAAAAGCAGGCGCUCUUCUACUCCACCAUCUUCU
..((((.((((..((((......))))..)))).------........((.....(((.((((....)))).)))(((.............))).))))))................... ( -28.22)
>DroSim_CAF1 918 114 - 1
AUGAGCAUGCCAAUGCCAGCAAAGGCAAAGGCAA------ACGAAAUAGCAAAUCCAAAUCGCAAUCGCGAAUUGUGCACGCAAAUCAAAAGCAGGCGCUCUUCCACUCCACCAUCUUCU
..((((.((((..((((......))))..)))).------........((.....(((.((((....)))).)))(((.............))).))))))................... ( -28.22)
>DroYak_CAF1 919 114 - 1
AUGAGCAUGCCAAUGCCAUCAAAGGCAAACGCAAUAGCAAACGCAAAAGCAAAUCCA------AAUCGCGAAUUGUGCACGCAAAUCAAAAGCAGGCGCUCUUCCACUCCACCAUCUUCU
..((((..(((..((((......))))...((..........((....)).......------......((.((((....)))).))....)).)))))))................... ( -23.60)
>consensus
AUGAGCAUGCCAAUGCCAGCAAAGGCAAAGGCAA______ACGAAAUAGCAAAUCCAAAUCGCAAUCGCGAAUUGUGCACGCAAAUCAAAAGCAGGCGCUCUUCCACUCCACCAUCUUCU
..((((..(((..((((......))))...((................((.................))((.((((....)))).))....)).)))))))................... (-21.83 = -21.83 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:04 2006