Locus 7810

Sequence ID X_DroMel_CAF1
Location 19,470,838 – 19,470,942
Length 104
Max. P 0.541803
window12812

overview

Window 2

Location 19,470,838 – 19,470,942
Length 104
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 85.26
Mean single sequence MFE -28.93
Consensus MFE -25.37
Energy contribution -25.27
Covariance contribution -0.10
Combinations/Pair 1.22
Mean z-score -1.30
Structure conservation index 0.88
SVM decision value 0.02
SVM RNA-class probability 0.541803
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19470838 104 - 22224390
UGUUGUUGUUGCCCUCGCCGUGGUUCUUCUUGUGUUUAUUUCGCUUGAAGUUUUUCGCGGCAAUUUCGAGCGGUAGUUUUUCAGCGCCGGAAAAUCGUAUUGCA
...(((...(((....(((((((..((((..(((.......)))..))))....)))))))..(((((.(((.(........).))))))))....)))..))) ( -29.20)
>DroSim_CAF1 174 104 - 1
UGUUGUUGUUGCUCUCGCUGUGGUUCUUCUUGUGUUUAUUUCGCUUGAAGUUUUUCGCGGCAAUUUCGAGCGGUAGUUGUCCAACGCCGGAAAAUCGUAUGGCA
.(((((((..((((..(((((((..((((..(((.......)))..))))....)))))))......))))..))).....))))((((..........)))). ( -29.00)
>DroYak_CAF1 163 101 - 1
UGU---UGUUGCGUUCGCUGUUGUUUUUGUUGUGUUUAUUCCGCACCAAGAUUUUCGCGGCAAUUUCAAGCGAUAGUUUUCCAGCGACGGAAAAUCGGAUCGCA
.((---(((((((...((....))(((((.((((.......)))).)))))....))))))))).....(((((.(((((((......)))))))...))))). ( -28.60)
>consensus
UGUUGUUGUUGCCCUCGCUGUGGUUCUUCUUGUGUUUAUUUCGCUUGAAGUUUUUCGCGGCAAUUUCGAGCGGUAGUUUUCCAGCGCCGGAAAAUCGUAUCGCA
................(((((((..((((..(((.......)))..))))....)))))))........(((((((((((((......)))))))..)))))). (-25.37 = -25.27 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:03 2006