Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,174,870 – 2,174,984 |
Length | 114 |
Max. P | 0.718286 |
Location | 2,174,870 – 2,174,984 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 96.84 |
Mean single sequence MFE | -31.17 |
Consensus MFE | -26.59 |
Energy contribution | -26.51 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.52 |
Structure conservation index | 0.85 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2174870 114 - 22224390 AGUGUAGUAGAGUGUAGAAGCACGGCGCGUAAUGGUAGAGAAAAGCCCCGUAAACGAUUUUGCGGGCUGCUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA .((.((((...((((....)))).((((.(((((.(((.....(((((.(((((....)))))))))).))))))))....((((...((...))...)))))))))))).)). ( -28.50) >DroSec_CAF1 46871 114 - 1 AGUGUAGCAGAGUGUAGAAGCACGGGGCGUAAUGGUAGAGAAAAGCCCCGUAAACGAUUUUGCGGGAUGCUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA (((((((((...(((((((..(((((((................)))))))......)))))))...)))))))))............(((.(((........))).))).... ( -32.19) >DroSim_CAF1 44563 114 - 1 AGUGUAGCAGAGUGUAGAAGCACGGGGCGUAAUGGUAGAGAAAAGCCCCGUAAACGAUUUUGCGGGCUGCUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA ((((((((((..(((((((..(((((((................)))))))......)))))))..))))))))))............(((.(((........))).))).... ( -36.59) >DroEre_CAF1 47979 114 - 1 AGUGUAGCAGAGUGUAGAAGUACGCGGCGUAAUGGUAGAGAAAAGCACCGUAAACGAUUUUGCGGGCUGUUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA ((((((((((..(((((((.((((..((................))..)))).....)))))))..))))))))))............(((.(((........))).))).... ( -27.59) >DroYak_CAF1 49864 114 - 1 AGUGUGGCAGAGUGUAGAAGUACGGCGCGUAAUGGUAGAGAAAAGCCCCGUAAACGAUUUUGCGGGCUGCUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA ((((..((((..(((((((.(((((.((................)).))))).....)))))))..))))..))))............(((.(((........))).))).... ( -30.99) >consensus AGUGUAGCAGAGUGUAGAAGCACGGGGCGUAAUGGUAGAGAAAAGCCCCGUAAACGAUUUUGCGGGCUGCUGCAUUAAAAUCCAUCAACGAAACGACAAUGGGCGUAUUGAACA ((((((((((..(((((((..((((.((................)).))))......)))))))..))))))))))............(((.(((........))).))).... (-26.59 = -26.51 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:41 2006