Locus 7809

Sequence ID X_DroMel_CAF1
Location 19,467,507 – 19,467,598
Length 91
Max. P 0.500000
window12811

overview

Window 1

Location 19,467,507 – 19,467,598
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 78.61
Mean single sequence MFE -34.98
Consensus MFE -27.09
Energy contribution -26.52
Covariance contribution -0.58
Combinations/Pair 1.40
Mean z-score -0.86
Structure conservation index 0.77
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19467507 91 - 22224390
-GGAG---GAGGCCAACAGCGCUGUCAAGUCGCGUCGCGUACAACUGCUGCGCAAGCGACUGGCCAUCGACAUGGUGAGCGUGGGCCAAGAGCAG---
-....---..((((....(((((((((.(((((...((((((....).)))))..)))))))))((((.....))))))))).))))........--- ( -36.70)
>DroPse_CAF1 7789 97 - 1
-GGAUACCGUGGCCAGUAGUGCGGUGAAGUCGCGACGGGUGCAGCUGCUCCGCAAGCGGCUGGCCAUCGACAUGGUAACUACGGGCCAGGAGCAGCUG
-.....((.(((((.(((((((.(((......(((..(((.((((((((.....))))))))))).))).))).)).))))).)))))))........ ( -40.40)
>DroGri_CAF1 10872 89 - 1
ACGAUGCCAAGGUGGAAAGUGCGGUGAAGUCGCGACGGGUGCAGUUGCUGCGCAAGCGGCUGGCCAUCGAUAUGGUUAGUGCGGA------ACAG---
......((..........((((((..(...(((.....)))...)..))))))..(((.((((((((....))))))))))))).------....--- ( -29.30)
>DroSec_CAF1 7432 91 - 1
-GGAG---GAGGUCAACAGCGCUGUCAAGUCGCGCCGCGUACAACUGCUGCGCAAGCGACUGGCCAUCGAUAUGGUGAGCGUGGGCCAAGAGCAG---
-....---..((((....(((((((((.(((((...((((((....).)))))..)))))))))((((.....))))))))).))))........--- ( -34.00)
>DroEre_CAF1 7672 91 - 1
-GGAU---GAGACCAAUAGCGCUGUAAAGUCCCGGCGCGUACAACUGCUGCGCAAGAGACUGGCCAUCGACAUGGUGAGCGUGGGUCAGGAGCAG---
-....---..((((....(((((....(((((..(((((((....))).))))..).)))).(((((....))))).))))).))))........--- ( -30.90)
>DroYak_CAF1 7686 91 - 1
-GGAG---GAGGCCACUAGCGCUGUCAAGUCGCGGCGUGUGCAACUGCUGCGCAAGCGACUGGCCAUCGAUAUGGUGAGCGUGGGCCAGGAGCAG---
-....---..((((....(((((((((.(((((....((((((.....)))))).)))))))))((((.....))))))))).))))........--- ( -38.60)
>consensus
_GGAG___GAGGCCAAUAGCGCUGUCAAGUCGCGACGCGUACAACUGCUGCGCAAGCGACUGGCCAUCGACAUGGUGAGCGUGGGCCAGGAGCAG___
..........((((....(((((....((((((..(((((......)).)))...)))))).(((((....))))).))))).))))........... (-27.09 = -26.52 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:02 2006