Locus 7808

Sequence ID X_DroMel_CAF1
Location 19,465,970 – 19,466,070
Length 100
Max. P 0.997179
window12809 window12810

overview

Window 9

Location 19,465,970 – 19,466,070
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 81.67
Mean single sequence MFE -32.89
Consensus MFE -28.21
Energy contribution -29.54
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -3.64
Structure conservation index 0.86
SVM decision value 2.81
SVM RNA-class probability 0.997179
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19465970 100 + 22224390
CGAUGUCCGUUACUGCGAGAACUAACGAGAUCUCGAGCCGCACCAUCACUCGUUACUGCUGCUCGGUCUCGUUAGUUUAAAAUAACAUGCAAACAGCCCC
..((((.(((....))).(((((((((((((..(((((.(((....(....)....))).))))))))))))))))))......))))((.....))... ( -30.70)
>DroSec_CAF1 6348 87 + 1
CGAUGUCCGUUACUGCGAGAACUAACGAGAUCUCGAGCAGCACCAUUACUCGUUACUGCUGCUCGGUCUCGUUACAU-------------ACGUAACUUA
((((((((((....))).))..(((((((((..(((((((((..............)))))))))))))))))))))-------------.))....... ( -29.04)
>DroSim_CAF1 6365 100 + 1
CGAUGUCCGUUACUGCGAGAACUAACGAGAACUCGAGCAGCACCAUUACUCGUUACUGCUGCUCGGUCUCGUUAGUUUGGAAUACCAUGCAAGCAGAUUA
............((((..((((((((((((.(.(((((((((..............))))))))))))))))))))))((....))......)))).... ( -38.94)
>consensus
CGAUGUCCGUUACUGCGAGAACUAACGAGAUCUCGAGCAGCACCAUUACUCGUUACUGCUGCUCGGUCUCGUUAGUUU__AAUA_CAUGCAAGCAGCUUA
.......(((....))).((((((((((((.(.(((((((((..............))))))))))))))))))))))...................... (-28.21 = -29.54 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 19,465,970 – 19,466,070
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 81.67
Mean single sequence MFE -35.97
Consensus MFE -28.57
Energy contribution -29.57
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -3.34
Structure conservation index 0.79
SVM decision value 2.65
SVM RNA-class probability 0.996046
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19465970 100 - 22224390
GGGGCUGUUUGCAUGUUAUUUUAAACUAACGAGACCGAGCAGCAGUAACGAGUGAUGGUGCGGCUCGAGAUCUCGUUAGUUCUCGCAGUAACGGACAUCG
((..(((((.((.(((.......(((((((((((((((((.(((.((........)).))).))))).).)))))))))))...))))))))))...)). ( -34.00)
>DroSec_CAF1 6348 87 - 1
UAAGUUACGU-------------AUGUAACGAGACCGAGCAGCAGUAACGAGUAAUGGUGCUGCUCGAGAUCUCGUUAGUUCUCGCAGUAACGGACAUCG
...(((((..-------------...((((((((((((((((((.((........)).))))))))).).))))))))((....)).)))))........ ( -32.90)
>DroSim_CAF1 6365 100 - 1
UAAUCUGCUUGCAUGGUAUUCCAAACUAACGAGACCGAGCAGCAGUAACGAGUAAUGGUGCUGCUCGAGUUCUCGUUAGUUCUCGCAGUAACGGACAUCG
...((((.((((.(((....)))(((((((((((((((((((((.((........)).))))))))).).)))))))))))......))))))))..... ( -41.00)
>consensus
UAAGCUGCUUGCAUG_UAUU__AAACUAACGAGACCGAGCAGCAGUAACGAGUAAUGGUGCUGCUCGAGAUCUCGUUAGUUCUCGCAGUAACGGACAUCG
.......................(((((((((((((((((((((.((........)).))))))))).).)))))))))))................... (-28.57 = -29.57 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:01 2006