Locus 7807

Sequence ID X_DroMel_CAF1
Location 19,459,132 – 19,459,242
Length 110
Max. P 0.854282
window12808

overview

Window 8

Location 19,459,132 – 19,459,242
Length 110
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 81.13
Mean single sequence MFE -19.43
Consensus MFE -13.25
Energy contribution -14.50
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.68
SVM decision value 0.80
SVM RNA-class probability 0.854282
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19459132 110 - 22224390
CAACAAAUAUGGGUGCACUAUAUCGCACGUACAUAAGUAAGUGUAUAAUUUAGCUACAUGGGCGAAUUCAUUGGCUAACUAUAUAAAAUGAAACAAUAUACCAUAUACCA------
......((((((((((........))))((((((......))))))...(((((((.(((((....))))))))))))......................))))))....------ ( -23.30)
>DroSec_CAF1 3018 112 - 1
CAACAAAUAUGGGUGCACUACAUCGCACGUACAUAAGUAAGUGUAUAAU-UAACUACAUUGGCGAAUUCAUUGGCUAACUAUAUAAAAUGAAACAAUAUACCAUAUGCCAUAU---
......((((((((((........))))...((((.((.((((((....-....)))))).))...((((((..............))))))...........))))))))))--- ( -19.84)
>DroEre_CAF1 2981 85 - 1
CAACAAAUAUGGGUGCACUAUAUCGCACGUAC--------UUGUAUAAU-UAAUUACAUUGGCGAAUUCAUUGGCUAACUAUAUAAAAUGAAAC----------------------
......((((((((((........))))....--------.((((....-....))))(((((.((....)).)))))))))))..........---------------------- ( -14.90)
>DroYak_CAF1 2896 107 - 1
CAACAAAUAUGGGUGCACUAUAUCGCACGUAC--------GUGUAUAAU-UAAUUACAUUGGCGAAUUCAUUUGCUAACUAUAUAAAAUGAAACAAUAUACCAUAUACUAUAUACC
......((((((((((........))))((..--------(((((....-....)))))(((((((....)))))))...............))......)))))).......... ( -19.70)
>consensus
CAACAAAUAUGGGUGCACUAUAUCGCACGUAC________GUGUAUAAU_UAACUACAUUGGCGAAUUCAUUGGCUAACUAUAUAAAAUGAAACAAUAUACCAUAUACCA______
......((((((((((........))))((((((......))))))............(((((.((....)).)))))))))))................................ (-13.25 = -14.50 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:00 2006