| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,457,412 – 19,457,520 |
| Length | 108 |
| Max. P | 0.850131 |
| Location | 19,457,412 – 19,457,520 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.13 |
| Mean single sequence MFE | -38.13 |
| Consensus MFE | -27.51 |
| Energy contribution | -27.35 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.850131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19457412 108 - 22224390 -UGCACAUUCACGAAGCU-----A-CCGAUCUGUGUGCUUACUCUGUAUAUAUUUGGUGGUCAGAAAGCUGGCCUCCAGAAUGUGCUGCGGCAGCGGGACCGAAUCCAGCGUGAG -.......(((((..(((-----.-(((....(((....)))...((((((.(((((.((((((....)))))).)))))))))))..))).))).(((.....)))..))))). ( -36.90) >DroVir_CAF1 1824 113 - 1 GGAGAUGCAGCCGGAGCUGGAAUCUUUGGCU--UGCACUUACUCUGCACGUAUUUGGUGGUCAGAAGGCUGGACUCCACAAUAUGCUGCGGCAACGGCACCGAGUCCAGCGUGAG .....(((((((((((.......))))))).--))))((((((((((((.......)))..))))..(((((((((.......(((((......)))))..)))))))))))))) ( -41.80) >DroPse_CAF1 2517 97 - 1 -CGAACGCC--------U-----U-CUG-GC--UGCACUUACUUUGAAUGUAUUUGGUUGUGAGGAAGCUAGCCUCUAAGAUGUGCUGCGGCAGUGGCACCGAAUCAAGCGUGAG -...((((.--------.-----.-(((-((--(...(((((..(.((.....)).)..)))))..)))))).......(((((((..(....)..))))...)))..))))... ( -29.00) >DroSec_CAF1 1339 108 - 1 -UGCACACUCCCGGAGCU-----A-CUGAUUUGUGUGCUUACUCUGUAUAUAUUUGGUGGUCAGAAAGCUGGCCUCCAGAAUGUGCUGCGGCAGCGGCACCGAGUCCAGCGUGAG -.((((((...(((....-----.-)))....))))))((((.(((......(((((.((((((....)))))).)))))..(((((((....)))))))......))).)))). ( -43.00) >DroEre_CAF1 1267 106 - 1 -GGCACACUUGCGGAGCU-----A-CUGAUCUG--AUCUUACUUUGAAUAUAUUUGGUGGUCAGAAAGCUGGCCUCCAGAAUGUGCUGCGGCAGUGGCACCGAGUCCAACGUGAG -....(((((((((.(((-----(-(((..(((--.((.......))((((.(((((.((((((....)))))).)))))))))....)))))))))).)))....))).))).. ( -34.20) >DroYak_CAF1 1159 109 - 1 AAGCACACUCUCGGAGCU-----A-CUGGUCUGUGUGCUUACUCUGAAUAUAUUUGGUGGUCAGGAAGCUGGCCUCCAGAAUGUGCUGCGGCAGUGGCACCGAGUCCAGCGUAAG ..((((((..((((....-----.-))))...))))))((((.(((......(((((.((((((....)))))).)))))..((((..(....)..))))......))).)))). ( -43.90) >consensus _GGCACACUCCCGGAGCU_____A_CUGAUCUGUGUGCUUACUCUGAAUAUAUUUGGUGGUCAGAAAGCUGGCCUCCAGAAUGUGCUGCGGCAGCGGCACCGAGUCCAGCGUGAG .....................................(((((.(((.((...(((((.((((((....)))))).)))))..(((((((....)))))))...)).))).))))) (-27.51 = -27.35 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:57 2006