Locus 7804

Sequence ID X_DroMel_CAF1
Location 19,455,062 – 19,455,167
Length 105
Max. P 0.702659
window12803

overview

Window 3

Location 19,455,062 – 19,455,167
Length 105
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 78.04
Mean single sequence MFE -26.75
Consensus MFE -21.15
Energy contribution -21.21
Covariance contribution 0.06
Combinations/Pair 1.22
Mean z-score -1.50
Structure conservation index 0.79
SVM decision value 0.36
SVM RNA-class probability 0.702659
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19455062 105 + 22224390
GCACUGAAUGGGCCAUCAAUCAGAUACCGA-------ACUAAACACCCAACCAGCUAUUGAUCAAACAGUGGUUGCCAGGACUUAAAAGGUCACUCAGUAUUUUGGCACAAU
..(((((...(((((((.....))).....-------.........((...(((((((((......)))))))))...))........))))..)))))............. ( -22.70)
>DroSec_CAF1 4783 99 + 1
GCACUGAAUGGGCCAUCAAUCAGAUACCGA-------ACUGAACA-----CCAGCUAUUGAUCCAACAGUGGUUGCCAGGACUUAAAAGGUCGCUCAGGAUUUUGGCAAAC-
...((((.(((....))).))))...((((-------(((((.(.-----.(((((((((......)))))))))....((((.....))))).))))...))))).....- ( -24.60)
>DroEre_CAF1 5421 102 + 1
GCUCUGAGUGGGCCAUCAAUCAGAUACCAAGCAGAU-ACUGAGCA-----CUAGCUAUUGAUUAAACAGUGGUUGCCAAGACUG-AAAGGCCACUCACAAU--UGGCAAGC-
(((.(((((((.(((((.....)))......(((..-.((..(((-----...(((((((......))))))))))..)).)))-...)))))))))....--.)))....- ( -26.80)
>DroYak_CAF1 4654 103 + 1
GGACUGAGUGGACCAUCAAUCAGAUACCUGAACGAUAACUGAACG-----UCAGCUAUUGAUAAAACAGUGGUUGCCAAGACCG-AAAGGUCACUCGGGAU--UGGCAAAC-
...((((((.((((((...((((....)))).(((((.(((....-----.))).)))))........)))))).....((((.-...))))))))))...--........- ( -32.90)
>consensus
GCACUGAAUGGGCCAUCAAUCAGAUACCGA_______ACUGAACA_____CCAGCUAUUGAUCAAACAGUGGUUGCCAAGACUG_AAAGGUCACUCAGGAU__UGGCAAAC_
...(((((((.(((.....((((...............)))).........(((((((((......))))))))).............)))))))))).............. (-21.15 = -21.21 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:56 2006