Locus 7803

Sequence ID X_DroMel_CAF1
Location 19,446,385 – 19,446,486
Length 101
Max. P 0.793650
window12802

overview

Window 2

Location 19,446,385 – 19,446,486
Length 101
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 89.82
Mean single sequence MFE -41.90
Consensus MFE -32.84
Energy contribution -33.00
Covariance contribution 0.16
Combinations/Pair 1.18
Mean z-score -1.75
Structure conservation index 0.78
SVM decision value 0.59
SVM RNA-class probability 0.793650
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19446385 101 - 22224390
AUACCG---GUGCGGUGGCGCUCACAUUUAUUCCCCUGGUUGCCUGGUCCAGGGGAUCUCCGCCGUCGGCUCCAGGCACUUGGUCCUUCAUGCCGGAUUCCUCA
...(((---(((((((((.(...........((((((((.........)))))))).).))))))).((..((((....)))).)).....)))))........ ( -38.30)
>DroSec_CAF1 1894 101 - 1
AUACCG---GCGCGGUGGCGCUCACAUUUAUUCCCUUGGUUGCCUGGUCCAGGGGAUCGCCGCCGUCGGCUCCAGACACUUGGUCCAUCAUGCCGGGUUCCUCA
...(((---(((((((((((...........((((((((.........)))))))).))))))))).((..((((....)))).)).....)))))........ ( -43.80)
>DroSim_CAF1 1954 101 - 1
AUACCG---GCGCGGUGGCGCUCACAUUUACUCCCCUGGUUGCCUGGUCCAGGGGAUCGCCGCCGUCGGCUCCAGGCACUUGGUCCAUCGUGCCGGGUUCCUCA
...(((---(((((((((((...........((((((((.........)))))))).)))))))...((..((((....)))).))...)))))))........ ( -47.80)
>DroEre_CAF1 1827 104 - 1
UUACCGAUGGCGCGGUGGCGCUCACAUUUAUUCCUUUGGUGGCCUGGUCAAGGGGAUCGCCACCGUCGGCUCCAGGCACUUGGUCCUCGAUGCCGGAUCCCUCA
.....((.((.(((((((((.........((((((((((........)))))))))))))))))))((((((.((((.....).))).)).))))...)).)). ( -38.80)
>DroYak_CAF1 1767 101 - 1
UUACCG---GCGCGGUGGCGCUCACAUUUAUUCCCCUGGUGGCCUGGUCCAGGGGAUCCCCUCCGUCGGCUCCCGGCACUUGGUCCGCCAUGUCGGAUUCCUCA
...(((---(((.(((((.(((.........((((((((.........))))))))........(((((...)))))....)))))))).))))))........ ( -40.80)
>consensus
AUACCG___GCGCGGUGGCGCUCACAUUUAUUCCCCUGGUUGCCUGGUCCAGGGGAUCGCCGCCGUCGGCUCCAGGCACUUGGUCCAUCAUGCCGGAUUCCUCA
...(((...(((((((((((...........((((((((.........)))))))).))))))))).((..((((....)))).)).....)))))........ (-32.84 = -33.00 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:55 2006