| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,439,885 – 19,439,981 |
| Length | 96 |
| Max. P | 0.843979 |
| Location | 19,439,885 – 19,439,981 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 97.29 |
| Mean single sequence MFE | -32.04 |
| Consensus MFE | -30.35 |
| Energy contribution | -30.39 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19439885 96 - 22224390 CGGCGGAGAAUUUAGAACUGGUGACUCAUCCUCCCCCAGAGCGACGGCAAAGAAAUACACAUAGUGUAUCUGGGGCGAGAAUUGAAGCGGGCCGCU .(((((....(((((....(....).....((((((((((((....)).......(((((...)))))))))))).)))..))))).....))))) ( -32.10) >DroSec_CAF1 7978 96 - 1 CGGCGGAGAAUUUAGAACUGGUGACUCAUCCUCCCCCAGAGCGACGGCAAAGAAAUACACAUAGUGUAUCUGGGGCGAGAAUCGAAGCGGGCCGCU .(((((........((...(....).....((((((((((((....)).......(((((...)))))))))))).)))..))........))))) ( -31.29) >DroSim_CAF1 8243 96 - 1 CGGCGGAGAAUUUAGAACUGGUGACUCAUCCUCCCCCAGAGCGACGGCAACGAUAUACACAUAGUGUAUCUGGGGCGAGAAUCGAAGCGGGCCGCU .(((((........((...(....).....((((((((((....((....))...(((((...)))))))))))).)))..))........))))) ( -33.29) >DroEre_CAF1 11429 96 - 1 CGGCGGAGAAUUUAGAACUGGUGACUCAUCCUCCCCCAGAGCGACGGCAAAGAAAUACACAUAGUGUAUCUGGGGCGAGAAUCGAAUCGGGCCGCU .(((((.((.....((...(....)...))((((((((((((....)).......(((((...)))))))))))).))).......))...))))) ( -31.80) >DroYak_CAF1 11762 96 - 1 CGGCGGAGAAUUUAGAACUGGUGACUCAUCCUCCCCCAGAGCGACGGCAAAGAAACACACAUAGUGUAUCUGGGGCGAGUAUCGAAUCGGGCCGCU .(((((.((..........(....)((((.((((((((((((....))......((((.....)))).))))))).))).)).)).))...))))) ( -31.70) >consensus CGGCGGAGAAUUUAGAACUGGUGACUCAUCCUCCCCCAGAGCGACGGCAAAGAAAUACACAUAGUGUAUCUGGGGCGAGAAUCGAAGCGGGCCGCU .(((((........((...(....).....((((((((((((....)).......(((((...)))))))))))).)))..))........))))) (-30.35 = -30.39 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:52 2006