| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,439,393 – 19,439,496 |
| Length | 103 |
| Max. P | 0.641217 |
| Location | 19,439,393 – 19,439,496 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 72.13 |
| Mean single sequence MFE | -19.63 |
| Consensus MFE | -13.28 |
| Energy contribution | -13.42 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19439393 103 + 22224390 -------CAUCUAG--C----GAAGCAACCACCAAAUAAACCACC-ACAAACAGCACAACAAUGGCCGAGGCUAACAAGAGGAAUAUCCCCAUCAAGCUGGGCGACUUCAGCGUCAU -------.......--.----((.((...................-................((((....))))....((((....((((((......)))).)))))).)).)).. ( -16.80) >DroPse_CAF1 27186 106 + 1 AGCUA--UUUGUAGCUC----AACGCAACCACCACAGA-AACUCGAGGAAA----UCAAAAAUGGCCGAAGCCAAUAAGAGGAAUAUCCCCAUCAAACUGGGCGACUUCAGCGUCAU (((((--....))))).----.((((............-..(((((.....----)).....((((....))))....)))(((..((((((......)))).)).))).))))... ( -23.50) >DroGri_CAF1 11399 93 + 1 -------UAUUUAU--CCACAACACACACAC--------------AUCAAA-GAAACAAAAAUGGCCGAGGCUAAUAAGAGAAAUAUUCCCAUCAAAUUGGGAGACUUCAGCGUUAU -------.......--....(((.(......--------------......-..........((((....))))......(((...((((((......))))))..))).).))).. ( -14.60) >DroSim_CAF1 7768 102 + 1 -------CAUCUAG--C----GAAGCAACCACCAAAUA-ACCACC-ACAAACAGCACAAAAAUGGCCGAGGCUAACAAGAGGAAUAUCCCCAUCAAGCUGGGCGACUUCAGCGUCAU -------.......--.----((.((............-......-................((((....))))....((((....((((((......)))).)))))).)).)).. ( -16.80) >DroAna_CAF1 18665 104 + 1 AGCUCAGUAUCCCG--A----GUAGCAACUACCAAAAA-A--AUC-ACAGA---UACAAUAAUGGCCGAGGCUAACAAGAGGAAUAUCCCCAUCAAGCUGGGCGACUUCAGCGUCAU .(((((((.....(--.----((((...))))).....-.--...-...((---(.......((((....))))....(.((.....)).))))..)))))))(((......))).. ( -22.60) >DroPer_CAF1 29390 106 + 1 AGCUA--UUUGUAGCUC----AACGCAACCACCACAGA-AACUCGAGGAAA----UCAAAAAUGGCCGAAGCCAAUAAGAGGAAUAUCCCCAUCAAACUGGGCGACUUCAGCGUCAU (((((--....))))).----.((((............-..(((((.....----)).....((((....))))....)))(((..((((((......)))).)).))).))))... ( -23.50) >consensus _______UAUCUAG__C____AAAGCAACCACCAAAGA_A_CACC_ACAAA____ACAAAAAUGGCCGAGGCUAACAAGAGGAAUAUCCCCAUCAAACUGGGCGACUUCAGCGUCAU ........................((....................................((((....))))....((((....((((((......)))).)))))).))..... (-13.28 = -13.42 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:51 2006