| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 325,346 – 325,466 |
| Length | 120 |
| Max. P | 0.547139 |
| Location | 325,346 – 325,466 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.17 |
| Mean single sequence MFE | -40.90 |
| Consensus MFE | -31.46 |
| Energy contribution | -31.30 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 325346 120 - 22224390 UAUGUCGCAGACCACGGUUGACAUCCUGUUGUCUACCGCCAUGGGUGUGAAGAAGCUUCCGGAGGGUAACAAGAGUUUCGAAUACGCCCAAGCCGUCGUCGACAUGUGUGAUAUCAUACA .((((((..(((..((((.((((......)))).))))...((((((((..(((((((..(........)..)))))))...))))))))....)))..))))))(((((....))))). ( -44.70) >DroVir_CAF1 112260 120 - 1 UAUGUCACAGACAACCGUCGAUAUACUGUUGUCGACGGCAAUGGGCGUCAAGAAGCUGCCGGAGGGCAAUAAGAGUUUCGAGUAUGCCCAGGCUGUGGUGGACAUGUGCGAUAUUAUACA ..(..(((((.(..(((((((((......)))))))))...((((((((..(((((((((....)))......))))))..).)))))))).)))))..).................... ( -42.40) >DroSim_CAF1 2339 120 - 1 UAUGUCGCAGACCACCGUUGACAUCCUGUUGUCUACCGCCAUGGGUGUGAAGAAGCUACCGGAGGGUAACAAGAGUUUCGAAUACGCCCAAGCCGUCGUCGACAUGUGCGAUAUCAUACA .(((((((((((....))).......(((((.(.((.((..((((((((..(((((((((....)))......))))))...)))))))).)).)).).)))))..))))))))...... ( -36.40) >DroYak_CAF1 2550 120 - 1 UAUGUCCCAGACCACCGUCGACAUCCUGUUGUCCACCGCCAUGGGUGUGAAGAAGCUCCCGGAGGGCAACAAGAGUUUCGAAUACGCUCAAGCCGUCGUCGACAUGUGCGAUAUCAUUCA ((((((...(((.....((((..((.((((((((.((.....(((.((......)).))))).)))))))).))...))))....((....)).)))...))))))...((......)). ( -34.50) >DroMoj_CAF1 99325 120 - 1 CAUGUCCCAGACGACGGUCGACAUUCUGCUGACGACAGCGAUGGGCGUCAAGAAGCUGCCCGAGGGCAACAAGAGUUUCGAGUAUGCCCAGGCCGUGGUCGAUAUGUGCGACAUCAUCCA ((((((...(((.((((((.......(((((....))))).((((((((..(((((((((....)))......))))))..).))))))))))))).))))))))).............. ( -46.50) >consensus UAUGUCCCAGACCACCGUCGACAUCCUGUUGUCGACCGCCAUGGGUGUGAAGAAGCUGCCGGAGGGCAACAAGAGUUUCGAAUACGCCCAAGCCGUCGUCGACAUGUGCGAUAUCAUACA .(((((.(((((....))).......(((((.(.((.((..((((((((..(((((((((....)))......))))))...)))))))).)).)).).)))))..)).)))))...... (-31.46 = -31.30 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:18 2006