Locus 7797

Sequence ID X_DroMel_CAF1
Location 19,427,109 – 19,427,269
Length 160
Max. P 0.865190
window12791 window12792

overview

Window 1

Location 19,427,109 – 19,427,229
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.92
Mean single sequence MFE -45.70
Consensus MFE -42.28
Energy contribution -41.96
Covariance contribution -0.32
Combinations/Pair 1.23
Mean z-score -1.42
Structure conservation index 0.93
SVM decision value 0.85
SVM RNA-class probability 0.865190
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19427109 120 - 22224390
UUCUGCAGCAAUCUUCGGAGCAUUGUGUCCAUGUGGUCGGCUGAGCAGGAGGCGGGAAAGCACACCGCUGUCUUGAGUGCCAAAAAGGUGGGAAUACUCGAUGCCAACUGAAGCUUGCUG
.....((((((.((((((.((((((.((((((.(..(.(((....((((((((((.........))))).)))))...))).)..).))))....)).))))))...)))))).)))))) ( -46.20)
>DroSec_CAF1 25420 120 - 1
UUCUGCAGCAAUCUUCGGAGCAUCGUGUCCAUGUGGGCGGCGGAGCAGGAGGCGGGAAAGCACACCGCUGUCUUGAGUGCCAGAUAGGUGGAGAUACUAGGUGCCAGCUGAAGCUUGCUG
.....((((((.((((((.(((((((.(((((.((...((((...((((((((((.........))))).)))))..))))...)).))))).))....)))))...)))))).)))))) ( -49.50)
>DroSim_CAF1 21507 120 - 1
CUCUGCAGCAAUCUUCGGAGCAUCGUGUCCAUGUGGGUGGCGGAGCAGGAGGCGGGAAAGCACACCGCUGUCUUGAGGGCCAGAUAGGUGGAGAUACUAGGUGCCAGCUGAAGCUUGCUG
.....((((((.((((((.(((((((.(((((.((..((((....((((((((((.........))))).)))))...))))..)).))))).))....)))))...)))))).)))))) ( -51.30)
>DroEre_CAF1 20176 120 - 1
UUCUGCAGUAAUCUUCGGAGCAUCAUGUCCAUGUGGGCGGCGGAACAGGAGGCGGGAAAGCAGACCGCUGUUUUGAGUGCCAGAAAGGUGGAGAUACUGGGUGCCAGUUGGAGCUUGCUG
.....((((((.((((((.(((((((.(((((.(.((((.(((((((....((((.........)))))))))))..))))....).))))).))....)))))...)))))).)))))) ( -41.70)
>DroYak_CAF1 26325 120 - 1
UUCUGCAGUAAUCUCCGGAGCAUCGUGUCCAUGUGGGCGGCAGAGCAGGAGGCGGGAAAGCAGACCGCCGUCUUGAGGGACAGAUAGGCGGAGAAACUUGGUGCCACUUGAAGCUUGCUG
.....((((((((((((....(((.(((((....(((((((...((.....))((.........)))))))))....))))))))...))))))........((........)))))))) ( -39.80)
>consensus
UUCUGCAGCAAUCUUCGGAGCAUCGUGUCCAUGUGGGCGGCGGAGCAGGAGGCGGGAAAGCACACCGCUGUCUUGAGUGCCAGAUAGGUGGAGAUACUAGGUGCCAGCUGAAGCUUGCUG
.....((((((.((((((.(((((((.(((((.((...(((....((((((((((.........))))).)))))...)))...)).))))).))....)))))...)))))).)))))) (-42.28 = -41.96 +  -0.32)

alignment

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secondary structure

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dotplot

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Window 2

Location 19,427,149 – 19,427,269
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -47.00
Consensus MFE -40.22
Energy contribution -39.78
Covariance contribution -0.44
Combinations/Pair 1.31
Mean z-score -1.47
Structure conservation index 0.86
SVM decision value 0.68
SVM RNA-class probability 0.820296
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19427149 120 - 22224390
CACUAGAGGCACAUCUGGAUUCAGCUCAAUGCUUAGGAGGUUCUGCAGCAAUCUUCGGAGCAUUGUGUCCAUGUGGUCGGCUGAGCAGGAGGCGGGAAAGCACACCGCUGUCUUGAGUGC
((((.(((((...((((..(((((((((((((((.((((((((....).))))))).)))))))).(.((....)).)))))))))))).(((((.........)))))))))).)))). ( -46.20)
>DroSec_CAF1 25460 120 - 1
CACCAGAGUCACUUCUGGAUUCAGCUCAAUGCUCAGGAGGUUCUGCAGCAAUCUUCGGAGCAUCGUGUCCAUGUGGGCGGCGGAGCAGGAGGCGGGAAAGCACACCGCUGUCUUGAGUGC
..((((((....))))))(((((((((.((((((.((((((((....).))))))).))))))(((((((....)))).)))))))((..(((((.........)))))..))))))).. ( -47.20)
>DroSim_CAF1 21547 120 - 1
CACCAGAGUCACCUCUGGAUUCAGCUCAAUGCUCAGGAGGCUCUGCAGCAAUCUUCGGAGCAUCGUGUCCAUGUGGGUGGCGGAGCAGGAGGCGGGAAAGCACACCGCUGUCUUGAGGGC
..((((((....)))))).............(((((((.(((((((.((..((....))))....(..((....))..))))))))....(((((.........))))).)))))))... ( -45.20)
>DroEre_CAF1 20216 120 - 1
CACCAGAGGCACCUCUGGAUUCAGCUCAAUGCUUAGGAGGUUCUGCAGUAAUCUUCGGAGCAUCAUGUCCAUGUGGGCGGCGGAACAGGAGGCGGGAAAGCAGACCGCUGUUUUGAGUGC
..((((((....)))))).....((((((.((.......(((((((.....((....))......(((((....))))))))))))....(((((.........))))))).)))))).. ( -45.40)
>DroYak_CAF1 26365 120 - 1
CACCACAGGCACCUCAGGAUUCAGCUCAAUGUUCAGGAGGUUCUGCAGUAAUCUCCGGAGCAUCGUGUCCAUGUGGGCGGCAGAGCAGGAGGCGGGAAAGCAGACCGCCGUCUUGAGGGA
...........(((((((((...((((.((((((.((((((((....).))))))).)))))).((((((....)))).)).))))....(((((.........)))))))))))))).. ( -51.00)
>consensus
CACCAGAGGCACCUCUGGAUUCAGCUCAAUGCUCAGGAGGUUCUGCAGCAAUCUUCGGAGCAUCGUGUCCAUGUGGGCGGCGGAGCAGGAGGCGGGAAAGCACACCGCUGUCUUGAGUGC
..((((((....))))))...........(((((((((.(((((((.((..((....))))....(((((....))))))))))))....(((((.........))))).))))))))). (-40.22 = -39.78 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:46 2006