Locus 7796

Sequence ID X_DroMel_CAF1
Location 19,426,567 – 19,426,681
Length 114
Max. P 0.606706
window12790

overview

Window 0

Location 19,426,567 – 19,426,681
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.60
Mean single sequence MFE -32.91
Consensus MFE -20.11
Energy contribution -21.07
Covariance contribution 0.96
Combinations/Pair 1.17
Mean z-score -1.99
Structure conservation index 0.61
SVM decision value 0.15
SVM RNA-class probability 0.606706
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19426567 114 + 22224390
CUACCAACCCAUCAAGAUGGUCAAGCAUAGCACAGGGCCAAUCGUUUCGCUC------CUGGUCAUGUCCUUGGCACUGACCAGUGCCAGUAUACGUGUGGAGCAUCCAAAGAACUCCAC
........((((....))))....((((..(.((((((.((....)).)).)------))))..))))..((((((((....)))))))).......((((((..((....)).)))))) ( -33.40)
>DroSec_CAF1 24885 108 + 1
CUACCAACCCAUCAACAUGGUCG------CCACAGGGCCAAUCCUUUCGCUC------CUGGUCUUGUCCUUGGCACUGACCAGUGCCAGUCUACGUGUGGAGCUUCCAAAGAACUCCUC
..............(((((....------..(((((((((............------.)))))))))..((((((((....))))))))....)))))((((.(((....))))))).. ( -32.52)
>DroSim_CAF1 20972 108 + 1
CUACCAACCCAUCAACAUGGUCG------CCACAGGGCCAAUCAUUUCGCUC------CUGGUCUUGUCCCUGGCACUGACCAGUGCCAGUCUACGUGUGGAGCUUCCAAAGAACUCCUC
..............(((((....------..(((((((((............------.)))))))))..((((((((....))))))))....)))))((((.(((....))))))).. ( -34.72)
>DroEre_CAF1 19624 105 + 1
CUUCCAACCCAGCAACAUGGUCA------CCAUAAGGCGAACCAUUUCGCUC------CUGGUCUUGUCCUUGGCACUGACCAGCGCCAGUACACGUGUGGAGCUUCCAAAAGAC---GC
...........((...((((((.------((....)).).)))))...((((------((((((.(((.....)))..)))))((((........)))))))))...........---)) ( -28.30)
>DroYak_CAF1 25758 114 + 1
CUACCAACCCAUCAACAUGGUCA------CCAUUGGGCCAACCAUUUCGCUCUUGCUUCUGCUCCUGUCCUUGGCACUGGCCAGCGCCAGUGUGGGUGUGGAGCUUCCAAAUGACUUCUC
..................(((((------...(((((...........((....))....(((((...(((..((((((((....)))))))))))...))))).))))).))))).... ( -35.60)
>consensus
CUACCAACCCAUCAACAUGGUCA______CCACAGGGCCAAUCAUUUCGCUC______CUGGUCUUGUCCUUGGCACUGACCAGUGCCAGUAUACGUGUGGAGCUUCCAAAGAACUCCUC
..............(((((............(((((((((...................)))))))))..((((((((....))))))))....)))))((.....))............ (-20.11 = -21.07 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:44 2006