Locus 7795

Sequence ID X_DroMel_CAF1
Location 19,423,434 – 19,423,554
Length 120
Max. P 0.904280
window12789

overview

Window 9

Location 19,423,434 – 19,423,554
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.31
Mean single sequence MFE -41.80
Consensus MFE -31.71
Energy contribution -33.90
Covariance contribution 2.19
Combinations/Pair 1.09
Mean z-score -2.40
Structure conservation index 0.76
SVM decision value 1.03
SVM RNA-class probability 0.904280
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19423434 120 - 22224390
GACGAGUGCAUUGCAAUUGACCAUGCUGUGACCAGCAGUCACAGUAUCAAGGGCAAGUACUGCAUCACCAAACUGACACCAGCUCCAAGUCUGCUGCCCAUAUUAGCUCUCAAGUCAGCU
((.((((((.((((..((((...(((((((((.....)))))))))))))..))))))))).).))......(((((...(((.........)))((........))......))))).. ( -36.10)
>DroSec_CAF1 21510 120 - 1
GACGAGUGCAUUGCAAUAGACCAUGCUGUGACCAGCAGUCACAGCAUCAAGGGCAAGUACUGCAUCUCCAAGGUGGCACCAGCUCCAACUGCGCUGCCCAUAUUAGCGCUCAAGUCAGCU
(((((((((.............((((((((((.....))))))))))...(((((.((..((((((.....))).)))...((.......)))))))))......))))))..))).... ( -42.60)
>DroSim_CAF1 17376 120 - 1
GACGAGUGCAUUGCAAUAGACCACGCUGUGACCAGCAGUCACAGCAUCAAGGGCAAGUACUGCAUUUCCAAGGUUGCACCAGCUCCAACUGCGCUGCCCAUAUUAGCGAUCAAGUCAGCU
(((...((.(((((((((......((((((((.....)))))))).....(((((.((..((((...(....).))))...((.......))))))))).)))).))))))).))).... ( -39.60)
>DroYak_CAF1 23015 120 - 1
GACGAGUGCAUUGCGGUGGACCACGCGGUGACCAGCAGUCACAGCAUCAAGGGCAAGUACUGCAUCAGCAAGCUGGCACCAGCUCCAAGUGCGGUGCCCGCAUUUGUCCUCAAGUCAGCU
(((((((((..(((.(((.....))).(((((.....))))).)))....(((((.(((((((....)).(((((....)))))...)))))..))))))))))))))............ ( -48.90)
>consensus
GACGAGUGCAUUGCAAUAGACCACGCUGUGACCAGCAGUCACAGCAUCAAGGGCAAGUACUGCAUCACCAAGCUGGCACCAGCUCCAACUGCGCUGCCCAUAUUAGCGCUCAAGUCAGCU
(((((((((...............((((((((.....)))))))).....(((((.(((((.........(((((....)))))...)))))..)))))......))))))..))).... (-31.71 = -33.90 +   2.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:43 2006