Locus 7794

Sequence ID X_DroMel_CAF1
Location 19,422,734 – 19,422,824
Length 90
Max. P 0.957976
window12788

overview

Window 8

Location 19,422,734 – 19,422,824
Length 90
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 91.53
Mean single sequence MFE -18.10
Consensus MFE -16.16
Energy contribution -16.10
Covariance contribution -0.06
Combinations/Pair 1.16
Mean z-score -2.11
Structure conservation index 0.89
SVM decision value 1.48
SVM RNA-class probability 0.957976
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19422734 90 - 22224390
UCUAU-AUAAUUACCCAUUAUUUAGUGGAUCAACUCAUUCUACAGUCUGUUUGUAAAACAUGCGGUCUAUGCGGUGGACUCAUUUUUCUUC
.....-....((((((((......(((((.........)))))((.((((.((.....)).)))).))))).))))).............. ( -15.80)
>DroSec_CAF1 20824 90 - 1
UCUAU-AUUAAUACCCACUAUUUAGUGGCUCAACUCCUUCUACAGUCUGUUUGUAAAACACGCGGUCUAUGCUGUGGACUCAUUUUUUUUC
.....-........(((((....)))))..........((((((((((((.((.....)).)))).....))))))))............. ( -18.10)
>DroSim_CAF1 16697 90 - 1
UCUAU-AUUAAUACCCACUAUUUAGUGGGUCAACUCCUUCUACAGUCUGUUUGUAAAGCACGCGGUCUAUGCUGUGGACUCAUUUUUCUUC
.....-......(((((((....)))))))........((((((((((((.((.....)).)))).....))))))))............. ( -23.00)
>DroYak_CAF1 22335 91 - 1
UCUAUUAUUACUACCCACUAUUUAGUGGAUAAACUCCUUCUACAGUUCGUUUAUAAAACACGCGGUCUAUGCUGUGGACUCAUUUUUCUUC
..............(((((....)))))..........((((((((((((...........)))).....))))))))............. ( -15.50)
>consensus
UCUAU_AUUAAUACCCACUAUUUAGUGGAUCAACUCCUUCUACAGUCUGUUUGUAAAACACGCGGUCUAUGCUGUGGACUCAUUUUUCUUC
..............(((((....)))))..........((((((((((((.((.....)).)))).....))))))))............. (-16.16 = -16.10 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:42 2006