Locus 7793

Sequence ID X_DroMel_CAF1
Location 19,421,477 – 19,421,597
Length 120
Max. P 0.662332
window12787

overview

Window 7

Location 19,421,477 – 19,421,597
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -37.67
Consensus MFE -31.45
Energy contribution -31.82
Covariance contribution 0.37
Combinations/Pair 1.06
Mean z-score -1.69
Structure conservation index 0.83
SVM decision value 0.27
SVM RNA-class probability 0.662332
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19421477 120 + 22224390
CUUUGCGGGCAGCAAAAGGCUUUCCAGACCGGCGAAUGGCGCUUCGAUUAGGAUAUGCAUGAGGUACGAGAACAGAAUCGUAAAGCCAAAGUCCGUCCAGAAUCGAAGCAUCUGGAGAUA
.(((((.....)))))....((((((((...((.....))(((((((((.((((..((.(..(((((((........))))...)))..)))..))))..))))))))).)))))))).. ( -39.20)
>DroSec_CAF1 19578 120 + 1
CUUUGCGGGCAGCAAAAGGCUUUCCAGAGCGGCGAAGGGCGCUUCGAUCAGGAUAUGCAUGAGGUACGAGAACAGAAUGGUGAAGCCAAAGUCCGACCAGAAUCGAAGCAUCUGGAGAAA
.(((((.....)))))....((((((((..(.(....).)((((((((((.........)))(((.((.((......(((.....)))...)))))))....))))))).)))))))).. ( -36.80)
>DroSim_CAF1 15451 120 + 1
CUUUGCGGGCAGCAAAAGGUUUUCCAGACCGGCGAAGGGCGCUUCGAUCAGGAUAUGCAUGAGGUACGAGAACAGAAUGGUGAAGCCAAAGUCCGACCAGAAUCGAAGCAUCUGGAGAAG
.(((((.....)))))...(((((((((..(.(....).)((((((((((.........)))(((.((.((......(((.....)))...)))))))....))))))).))))))))). ( -37.50)
>DroYak_CAF1 21086 119 + 1
CUUUGUGGGCAUCAAAAGGCUCUCCAGAGCGGCGAAGGGCGCUUCGAUCAGGAUAUGCAUGAGGUACGAGAAUAGAAUCGUGAAGCCAAAGUCAGGCCAGAAUCGAAGCAUCUGGAGAA-
........((........))((((((((..(.(....).)(((((((((.((...((.((..(((((((........))))...)))...))))..)).).)))))))).)))))))).- ( -37.20)
>consensus
CUUUGCGGGCAGCAAAAGGCUUUCCAGACCGGCGAAGGGCGCUUCGAUCAGGAUAUGCAUGAGGUACGAGAACAGAAUCGUGAAGCCAAAGUCCGACCAGAAUCGAAGCAUCUGGAGAAA
.(((((.....)))))....((((((((..(.(....).)(((((((((.((....((.(..(((((((........))))...)))..)))....)).).)))))))).)))))))).. (-31.45 = -31.82 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:41 2006